TreatCFM001692's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.8: Unknown Function Kinase | 0.006498781 | kinase family |
| membrane coat | 0.041327413 | GO:0030117 |
| plasmodesma | 0.041327413 | GO:0009506 |
| cutin biosynthesis | 0.047615159 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.047615159 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.047615159 | plantCyc |
| long-chain fatty acid activation | 0.047615159 | plantCyc |
| mannitol biosynthesis | 0.047615159 | plantCyc |
| oleate biosynthesis I (plants) | 0.047615159 | plantCyc |
| sporopollenin precursors biosynthesis | 0.047615159 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.047615159 | plantCyc |
| Fatty acid metabolism | 0.048379466 | KEGG pathway |
| Lysosome | 0.048379466 | KEGG pathway |
| regulation of stomatal movement | 0.049468127 | GO:0010119 |
| long-chain fatty acid metabolic process | 0.049468127 | GO:0001676 |
| phosphatidylcholine acyl editing | 0.0498749 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002036 | AT3G53570 (3.00E-41) | AFC1|FUS3-complementing gene 1 |
| CRO_T002426 | AT1G28440 (0) | HSL1|HAESA-like 1 |
| CRO_T003666 | AT5G47630 (3.00E-23) | mtACP3|mitochondrial acyl carrier protein 3 |
| CRO_T008956 | AT1G65920 (1.00E-13) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T009441 | AT2G20050 (7.00E-21) | protein serine/threonine phosphatases; protein kinases; catalytics; cAMP-dependent protein kinase regulators; ATP binding; protein serine/threonine phosphatases |
| CRO_T010836 | AT2G04350 (0) | LACS8|long-chain acyl-CoA synthetase 8 |
| CRO_T011283 | AT1G20160 (2.00E-117) | ATSBT5.2|Subtilisin-like serine endopeptidase family protein |
| CRO_T014818 | AT3G45470 (4.00E-20) | IBR domain containing protein |
| CRO_T023951 | AT2G26770 (0) | SCAB1|stomatal closure-related actin binding protein 1 |
| CRO_T028174 | AT1G31730 (0) | Adaptin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001449 | recycling endosome mannitol degradation II Thyroid hormone signaling pathway Rab guanyl-nucleotide exchange factor activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription regulator: PHD calcium-dependent protein serine/threonine kinase activity zinc ion binding calmodulin-dependent protein kinase activity actin binding Phenylpropanoid biosynthesis regulation of stomatal movement actin filament organization peptidyl-serine phosphorylation protein autophosphorylation positive regulation of GTPase activity abscisic acid-activated signaling pathway calmodulin binding Transcription_related, Transcription factor: MYB | details |
| TreatCFM001548 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase peptidyl-serine phosphorylation fatty acid biosynthetic process abscisic acid-activated signaling pathway protein autophosphorylation intracellular signal transduction phosphoprotein phosphatase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Oxidative phosphorylation calmodulin binding | details |
| TreatCFM001671 | 2-oxoglutarate decarboxylation to succinyl-CoA Transcription_related, Transcription factor: LOB carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity oxoglutarate dehydrogenase (succinyl-transferring) activity thiamine pyrophosphate binding membrane coat lyase activity S-adenosylmethionine-dependent methyltransferase activity Lysosome Peroxisome | details |
| TreatCFM001783 | Protein_kinases_phosphatases, PPC:4.5.8: Unknown Function Kinase Thyroid hormone signaling pathway Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: MYB regulation of stomatal movement actin filament organization calcium-dependent protein serine/threonine kinase activity actin binding calmodulin-dependent protein kinase activity | details |
| TreatCFM001816 | Protein digestion and absorption Lysosome membrane coat regulation of stomatal movement actin filament organization amino acid transmembrane transporter activity actin binding amino acid transmembrane transport vesicle-mediated transport intracellular protein transport | details |
| TreatCFM001892 | Transcription_related, Transcription factor: NF-X1 Human papillomavirus infection Thyroid hormone signaling pathway response to light intensity salicylic acid biosynthetic process hexose metabolic process response to microbial phytotoxin regulation of hydrogen peroxide metabolic process regulation of stomatal movement Glycolysis / Gluconeogenesis actin filament organization aldose 1-epimerase activity Transcription_related, Transcription factor: MYB response to salt stress defense response to bacterium | details |
Expression profiles
 Show details about module gene expression profiling |