TreatCFM001783's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.8: Unknown Function Kinase | 0.004550155 | kinase family |
| Thyroid hormone signaling pathway | 0.004962045 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.016457794 | kinase family |
| Transcription_related, Transcription factor: MYB | 0.034240303 | TF family |
| regulation of stomatal movement | 0.044708741 | GO:0010119 |
| actin filament organization | 0.044708741 | GO:0007015 |
| calcium-dependent protein serine/threonine kinase activity | 0.046162577 | GO:0009931 |
| actin binding | 0.046162577 | GO:0003779 |
| calmodulin-dependent protein kinase activity | 0.046162577 | GO:0004683 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002036 | AT3G53570 (3.00E-41) | AFC1|FUS3-complementing gene 1 |
| CRO_T003506 | AT1G06010 (2.00E-13) | unknown protein |
| CRO_T003666 | AT5G47630 (3.00E-23) | mtACP3|mitochondrial acyl carrier protein 3 |
| CRO_T003812 | AT1G11060 (2.00E-145) | WAPL (Wings apart-like protein regulation of heterochromatin) protein |
| CRO_T004367 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
| CRO_T015565 | AT3G52250 (3.00E-07) | Duplicated homeodomain-like superfamily protein |
| CRO_T023951 | AT2G26770 (0) | SCAB1|stomatal closure-related actin binding protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001000 | recycling endosome Thyroid hormone signaling pathway Rab guanyl-nucleotide exchange factor activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC Transcription_related, Transcription factor: MYB ubiquitin protein ligase binding cell wall organization positive regulation of GTPase activity protein ubiquitination transferase activity, transferring glycosyl groups ubiquitin protein ligase activity Golgi membrane | details |
| TreatCFM001449 | recycling endosome mannitol degradation II Thyroid hormone signaling pathway Rab guanyl-nucleotide exchange factor activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription regulator: PHD calcium-dependent protein serine/threonine kinase activity zinc ion binding calmodulin-dependent protein kinase activity actin binding Phenylpropanoid biosynthesis regulation of stomatal movement actin filament organization peptidyl-serine phosphorylation protein autophosphorylation positive regulation of GTPase activity abscisic acid-activated signaling pathway calmodulin binding Transcription_related, Transcription factor: MYB | details |
| TreatCFM001548 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase peptidyl-serine phosphorylation fatty acid biosynthetic process abscisic acid-activated signaling pathway protein autophosphorylation intracellular signal transduction phosphoprotein phosphatase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Oxidative phosphorylation calmodulin binding | details |
| TreatCFM001589 | 4-hydroxy-4-methyl-L-glutamate biosynthesis N-acetylgalactosamine kinase activity galactokinase activity 2'-deoxymugineic acid phytosiderophore biosynthesis D-galactose degradation III nucleomorph stachyose degradation late endosome RNA polymerase II activity retromer complex DNA-directed RNA polymerase II, core complex transcription from RNA polymerase II promoter retrograde transport, endosome to Golgi galactose metabolic process carbohydrate phosphorylation | details |
| TreatCFM001692 | Protein_kinases_phosphatases, PPC:4.5.8: Unknown Function Kinase membrane coat plasmodesma cutin biosynthesis glucose and glucose-1-phosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) long-chain fatty acid activation mannitol biosynthesis oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) Fatty acid metabolism Lysosome regulation of stomatal movement long-chain fatty acid metabolic process phosphatidylcholine acyl editing | details |
| TreatCFM001816 | Protein digestion and absorption Lysosome membrane coat regulation of stomatal movement actin filament organization amino acid transmembrane transporter activity actin binding amino acid transmembrane transport vesicle-mediated transport intracellular protein transport | details |
| TreatCFM001892 | Transcription_related, Transcription factor: NF-X1 Human papillomavirus infection Thyroid hormone signaling pathway response to light intensity salicylic acid biosynthetic process hexose metabolic process response to microbial phytotoxin regulation of hydrogen peroxide metabolic process regulation of stomatal movement Glycolysis / Gluconeogenesis actin filament organization aldose 1-epimerase activity Transcription_related, Transcription factor: MYB response to salt stress defense response to bacterium | details |
| TreatCFM001962 | L-alpha-amino acid transmembrane transport L-amino acid transport hexose metabolic process MicroRNAs in cancer Thyroid hormone signaling pathway Glycolysis / Gluconeogenesis aldose 1-epimerase activity early endosome membrane L-amino acid transmembrane transporter activity Transcription_related, Transcription factor: MYB vesicle fusion exocytosis protein transport SNAP receptor activity SNARE binding antiporter activity carbohydrate binding | details |
| TreatCFM002143 | cytosol Sec61 translocon complex aldose 1-epimerase activity intracellular transport hexose metabolic process positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation COP9 signalosome membrane coat Thyroid hormone signaling pathway proteasome complex Transcription_related, Transcription factor: MYB Glycolysis / Gluconeogenesis Lysosome Protein export protein transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |