TreatCFM001698's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Thyroid hormone signaling pathway | 0.004253747 | KEGG pathway |
| Golgi apparatus part | 0.010276513 | GO:0044431 |
| core mediator complex | 0.010276513 | GO:0070847 |
| mitochondrial membrane | 0.010276513 | GO:0031966 |
| COPII vesicle coat | 0.011557661 | GO:0030127 |
| intracellular transport | 0.011775312 | GO:0046907 |
| positive regulation of cell proliferation | 0.011775312 | GO:0008284 |
| mitochondrial transport | 0.011775312 | GO:0006839 |
| cold acclimation | 0.011775312 | GO:0009631 |
| vacuolar transport | 0.014126199 | GO:0007034 |
| mediator complex | 0.02154881 | GO:0016592 |
| RNA polymerase II transcription cofactor activity | 0.03235661 | GO:0001104 |
| ER to Golgi vesicle-mediated transport | 0.03818221 | GO:0006888 |
| regulation of transcription from RNA polymerase II promoter | 0.04025336 | GO:0006357 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013390 | AT2G26780 (1.00E-48) | ARM repeat superfamily protein |
| CRO_T014604 | AT4G19490 (0) | ATVPS54|VPS54 HOMOLOG |
| CRO_T017842 | AT3G44340 (0) | CEF|clone eighty-four |
| CRO_T025861 | AT3G04740 (6.00E-13) | ATMED14|ARABIDOPSIS MEDIATOR COMPONENTS 14; MED14|MEDIATOR COMPONENTS 14; SWP|STRUWWELPETER |
| CRO_T026471 | AT3G54110 (5.00E-44) | ATPUMP1|PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ATUCP1|UNCOUPLING PROTEIN 1 |
| CRO_T028857 | AT1G54310 (5.00E-78) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM000728 | proteasome regulatory particle, lid subcomplex regulation of protein catabolic process phospholipid transport COPII vesicle coat enzyme regulator activity regulation of catalytic activity ER to Golgi vesicle-mediated transport ubiquitin-dependent protein catabolic process mRNA surveillance pathway Proteasome intracellular protein transport | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001697 | ceramide degradation Thyroid hormone signaling pathway sphingolipid biosynthesis (plants) D-erythro-sphingosine kinase activity sphingolipid biosynthetic process positive regulation of cell proliferation cold acclimation core mediator complex COPII vesicle coat plasma membrane mediator complex RNA polymerase II transcription cofactor activity zinc ion binding regulation of transcription from RNA polymerase II promoter ER to Golgi vesicle-mediated transport methyltransferase activity | details |
| TreatCFM001900 | D-erythro-sphingosine kinase activity ceramide degradation Nitrogen metabolism sphingolipid biosynthesis (plants) sphingolipid biosynthetic process regulation of gene expression cellular amino acid metabolic process Peroxisome | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |