TreatCFM000339's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA ligation | 0.0107604 | GO:0006266 |
| protein initiator methionine removal | 0.0107604 | GO:0070084 |
| polynucleotide 5' dephosphorylation | 0.0107604 | GO:0098507 |
| 7-methylguanosine mRNA capping | 0.013447717 | GO:0006370 |
| polynucleotide 5'-phosphatase activity | 0.01465391 | GO:0004651 |
| mRNA guanylyltransferase activity | 0.01465391 | GO:0004484 |
| metalloaminopeptidase activity | 0.01465391 | GO:0070006 |
| 1-phosphatidylinositol 4-kinase activity | 0.01465391 | GO:0004430 |
| protein tyrosine/serine/threonine phosphatase activity | 0.017901074 | GO:0008138 |
| DNA ligase (ATP) activity | 0.017901074 | GO:0003910 |
| mRNA surveillance pathway | 0.019690233 | KEGG pathway |
| 3-phosphoinositide biosynthesis | 0.021133915 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.021133915 | plantCyc |
| homogalacturonan degradation | 0.021133915 | plantCyc |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.026046135 | cazy family |
| Transcription_related, Transcription factor: NAC | 0.026046135 | TF family |
| protein tyrosine phosphatase activity | 0.027871822 | GO:0004725 |
| cytosolic ribosome | 0.032353745 | GO:0022626 |
| phosphatidylinositol phosphorylation | 0.038342655 | GO:0046854 |
| DNA recombination | 0.038342655 | GO:0006310 |
| peptidyl-tyrosine dephosphorylation | 0.038342655 | GO:0035335 |
| protein peptidyl-prolyl isomerization | 0.045585318 | GO:0000413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002139 | AT1G01720 (2.00E-40) | ANAC002|Arabidopsis NAC domain containing protein 2 |
| CRO_T013978 | AT1G03080 (1.00E-64) | NET1D|Networked 1D |
| CRO_T019419 | AT2G45240 (3.00E-157) | MAP1A|methionine aminopeptidase 1A |
| CRO_T025368 | AT3G44600 (5.00E-30) | CYP71|cyclophilin 71 |
| CRO_T028857 | AT1G54310 (5.00E-78) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T029189 | AT5G24240 (0) | Phosphatidylinositol 3- and 4-kinase ; Ubiquitin family protein |
| CRO_T029372 | AT1G30755 (9.00E-102) | Protein of unknown function (DUF668) |
| CRO_T032772 | AT3G09100 (5.00E-86) | mRNA capping enzyme family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000758 | response to aluminum ion response to acidic pH regulation of apoptotic process negative regulation of mRNA splicing, via spliceosome ATP metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV proton-transporting V-type ATPase, V1 domain benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I fatty acid elongation -- saturated L-glutamate degradation IV cellular component organization chaperone-mediated protein folding phosphatidylinositol phosphorylation | details |
| TreatCFM001415 | cytosol inosine biosynthetic process hypoxanthine salvage adenosine catabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV exocyst assembly exocyst localization Autophagy - animal Butanoate metabolism nucleophagy autophagosome assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity L-glutamate degradation IV D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation transaminase activity exocyst protein autophosphorylation response to salt stress identical protein binding | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001609 | mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity arylformamidase activity tryptophan catabolic process to kynurenine DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping phospholipid-translocating ATPase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity phospholipid translocation peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity mRNA surveillance pathway DNA recombination gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt DNA repair | details |
| TreatCFM001697 | ceramide degradation Thyroid hormone signaling pathway sphingolipid biosynthesis (plants) D-erythro-sphingosine kinase activity sphingolipid biosynthetic process positive regulation of cell proliferation cold acclimation core mediator complex COPII vesicle coat plasma membrane mediator complex RNA polymerase II transcription cofactor activity zinc ion binding regulation of transcription from RNA polymerase II promoter ER to Golgi vesicle-mediated transport methyltransferase activity | details |
| TreatCFM001698 | Thyroid hormone signaling pathway Golgi apparatus part core mediator complex mitochondrial membrane COPII vesicle coat intracellular transport positive regulation of cell proliferation mitochondrial transport cold acclimation vacuolar transport mediator complex RNA polymerase II transcription cofactor activity ER to Golgi vesicle-mediated transport regulation of transcription from RNA polymerase II promoter | details |
| TreatCFM001878 | Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis cellular response to extracellular stimulus SUMO transferase activity 1-phosphatidylinositol 4-kinase activity Transcription_related, Transcription regulator: PHD RNA polymerase II transcription cofactor activity cell growth phosphatidylinositol phosphorylation protein sumoylation response to salt stress protein autophosphorylation regulation of transcription from RNA polymerase II promoter protein peptidyl-prolyl isomerization Transcription_related, Transcription factor: NAC mediator complex peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |