TreatCFM001702's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV | 0.002127502 | kinase family |
| Antigen processing and presentation | 0.005131975 | KEGG pathway |
| high-affinity secondary active ammonium transmembrane transporter activity | 0.005213151 | GO:0015398 |
| organic cation transport | 0.007417797 | GO:0015695 |
| nitrogen utilization | 0.007417797 | GO:0019740 |
| ammonium transmembrane transport | 0.007417797 | GO:0072488 |
| phosphatidylcholine acyl editing | 0.012195236 | plantCyc |
| phospholipases | 0.012195236 | plantCyc |
| lipid metabolic process | 0.038754009 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000905 | - | - |
| CRO_T009610 | AT2G13570 (5.00E-37) | NF-YB7|nuclear factor Y, subunit B7 |
| CRO_T016390 | - | - |
| CRO_T023036 | AT2G42690 (2.00E-137) | alpha/beta-Hydrolases superfamily protein |
| CRO_T030309 | - | - |
| CRO_T030363 | AT5G06820 (5.00E-56) | SRF2|STRUBBELIG-receptor family 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000173 | hesperitin glycoside biosynthesis naringenin glycoside biosynthesis acetylglucosaminyltransferase activity high-affinity secondary active ammonium transmembrane transporter activity | details |
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM001168 | Antigen processing and presentation glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: C2C2-Dof cellular protein metabolic process single-organism process cellular transition metal ion homeostasis metal ion transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001173 | Antigen processing and presentation Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase protein acetyltransferase complex signal transduction by protein phosphorylation N-terminal protein amino acid acetylation phosphorelay signal transduction system phosphorelay sensor kinase activity peptide alpha-N-acetyltransferase activity | details |
| TreatCFM001443 | box H/ACA snoRNP complex pseudouridine synthesis G-protein coupled receptor signaling pathway oligopeptide transport G-protein beta/gamma-subunit complex binding Antigen processing and presentation ribosome biogenesis Ribosome biogenesis in eukaryotes signal transducer activity | details |
| TreatCFM001641 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV glutaminyl-tRNAgln biosynthesis via transamidation Transcription_related, Transcription regulator: LIM homogalacturonan biosynthesis isoflavonoid biosynthesis II pectin biosynthetic process spliceosomal snRNP assembly G-protein coupled receptor signaling pathway oligopeptide transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM001908 | Transcription_related, Transcription factor: WRKY nuclear cap binding complex Transcription_related, Transcription factor: Alfin-like mRNA cis splicing, via spliceosome RNA cap binding Transcription_related, Transcription factor: Orphans Spliceosome | details |
| TreatCFM002028 | box H/ACA snoRNP complex Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Synaptic vesicle cycle pseudouridine synthesis vesicle docking involved in exocytosis cytosolic small ribosomal subunit maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosome biogenesis Antigen processing and presentation NF-kappa B signaling pathway Ribosome biogenesis in eukaryotes | details |
| TreatCFM002068 | homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity Antigen processing and presentation MAPK signaling pathway NF-kappa B signaling pathway cell wall organization Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |