TreatCFM002028's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| box H/ACA snoRNP complex | 0.001861592 | GO:0031429 |
| Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV | 0.002481903 | kinase family |
| Synaptic vesicle cycle | 0.009445018 | KEGG pathway |
| pseudouridine synthesis | 0.014157482 | GO:0001522 |
| vesicle docking involved in exocytosis | 0.014157482 | GO:0006904 |
| cytosolic small ribosomal subunit | 0.014833445 | GO:0022627 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.019430331 | GO:0000462 |
| ribosome biogenesis | 0.019430331 | GO:0042254 |
| Antigen processing and presentation | 0.03416239 | KEGG pathway |
| NF-kappa B signaling pathway | 0.036071351 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.049817724 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008400 | AT4G00330 (1.00E-131) | CRCK2|calmodulin-binding receptor-like cytoplasmic kinase 2 |
| CRO_T009610 | AT2G13570 (5.00E-37) | NF-YB7|nuclear factor Y, subunit B7 |
| CRO_T012824 | AT1G02010 (0) | SEC1A|secretory 1A |
| CRO_T022097 | AT3G03920 (2.00E-46) | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein |
| CRO_T026109 | AT2G36930 (1.00E-13) | zinc finger (C2H2 type) family protein |
| CRO_T027616 | - | - |
| CRO_T029796 | AT5G59240 (3.00E-79) | Ribosomal protein S8e family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000173 | hesperitin glycoside biosynthesis naringenin glycoside biosynthesis acetylglucosaminyltransferase activity high-affinity secondary active ammonium transmembrane transporter activity | details |
| TreatCFM000406 | lipid IVA biosynthesis box H/ACA snoRNP complex homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity pectin biosynthetic process pseudouridine synthesis transferase activity, transferring acyl groups other than amino-acyl groups ribosome biogenesis Amino sugar and nucleotide sugar metabolism Ribosome biogenesis in eukaryotes cell wall organization Golgi membrane | details |
| TreatCFM000491 | plastoquinol-9 biosynthesis I Synaptic vesicle cycle vesicle docking involved in exocytosis G-protein coupled receptor signaling pathway G-protein beta/gamma-subunit complex binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) signal transducer activity | details |
| TreatCFM000801 | Transcription_related, Transcription factor: C2C2-Dof Antigen processing and presentation metal ion transport cellular transition metal ion homeostasis sulfate transmembrane transport zinc II ion transmembrane transport | details |
| TreatCFM001168 | Antigen processing and presentation glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: C2C2-Dof cellular protein metabolic process single-organism process cellular transition metal ion homeostasis metal ion transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001173 | Antigen processing and presentation Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase protein acetyltransferase complex signal transduction by protein phosphorylation N-terminal protein amino acid acetylation phosphorelay signal transduction system phosphorelay sensor kinase activity peptide alpha-N-acetyltransferase activity | details |
| TreatCFM001443 | box H/ACA snoRNP complex pseudouridine synthesis G-protein coupled receptor signaling pathway oligopeptide transport G-protein beta/gamma-subunit complex binding Antigen processing and presentation ribosome biogenesis Ribosome biogenesis in eukaryotes signal transducer activity | details |
| TreatCFM001529 | box H/ACA snoRNP complex oligopeptide transport pseudouridine synthesis Transcription_related, Transcription factor: HSF Ribosome biogenesis in eukaryotes ribosome biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001586 | positive regulation of translational fidelity oligopeptide transport cytosolic small ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001641 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV glutaminyl-tRNAgln biosynthesis via transamidation Transcription_related, Transcription regulator: LIM homogalacturonan biosynthesis isoflavonoid biosynthesis II pectin biosynthetic process spliceosomal snRNP assembly G-protein coupled receptor signaling pathway oligopeptide transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM001702 | Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV Antigen processing and presentation high-affinity secondary active ammonium transmembrane transporter activity organic cation transport nitrogen utilization ammonium transmembrane transport phosphatidylcholine acyl editing phospholipases lipid metabolic process | details |
| TreatCFM001795 | box H/ACA snoRNP complex Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity Ribosome biogenesis in eukaryotes pseudouridine synthesis ribosome biogenesis protein deubiquitination ubiquitin-dependent protein catabolic process | details |
| TreatCFM002068 | homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity Antigen processing and presentation MAPK signaling pathway NF-kappa B signaling pathway cell wall organization Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |