TreatCFM001739's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 0.003198464 | KEGG pathway |
| translational termination | 0.005316398 | GO:0006415 |
| translation release factor activity, codon specific | 0.00974673 | GO:0016149 |
| mRNA surveillance pathway | 0.022207137 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
| cytosolic large ribosomal subunit | 0.044939697 | GO:0022625 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007302 | AT1G12920 (0) | ERF1-2|eukaryotic release factor 1-2 |
| CRO_T011511 | AT3G26850 (8.00E-34) | histone-lysine N-methyltransferases |
| CRO_T013794 | AT3G05590 (4.00E-89) | RPL18|ribosomal protein L18 |
| CRO_T025492 | AT3G06290 (7.00E-176) | SAC3B|yeast Sac3 homolog B |
| CRO_T031734 | - | - |
| CRO_T032724 | AT4G16720 (5.00E-91) | Ribosomal protein L23/L15e family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000743 | Fatty acid metabolism fatty acid β-oxidation II (peroxisome) jasmonic acid biosynthesis transferase activity, transferring acyl groups other than amino-acyl groups electron carrier activity anchored component of plasma membrane | details |
| TreatCFM001313 | translation release factor activity, codon specific mRNA surveillance pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination cytoplasm single-organism process | details |
| TreatCFM002097 | D-serine degradation detoxification of reactive carbonyls in chloroplasts Fatty acid metabolism organic cyclic compound binding heterocyclic compound binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |