TreatCFM002097's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| D-serine degradation | 0.001595745 | plantCyc |
| detoxification of reactive carbonyls in chloroplasts | 0.008227641 | plantCyc |
| Fatty acid metabolism | 0.010593591 | KEGG pathway |
| organic cyclic compound binding | 0.031548419 | GO:0097159 |
| heterocyclic compound binding | 0.031548419 | GO:1901363 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005348 | AT5G38840 (5.00E-142) | SMAD/FHA domain-containing protein |
| CRO_T013184 | AT1G24360 (8.00E-27) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T019310 | AT3G20390 (2.00E-57) | endoribonuclease L-PSP family protein |
| CRO_T024370 | AT3G26000 (8.00E-70) | Ribonuclease inhibitor |
| CRO_T025492 | AT3G06290 (7.00E-176) | SAC3B|yeast Sac3 homolog B |
| CRO_T030373 | AT3G24880 (3.00E-09) | Helicase/SANT-associated, DNA binding protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000743 | Fatty acid metabolism fatty acid β-oxidation II (peroxisome) jasmonic acid biosynthesis transferase activity, transferring acyl groups other than amino-acyl groups electron carrier activity anchored component of plasma membrane | details |
| TreatCFM001100 | pyrimidine ribonucleosides salvage I amyloplast organization protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway negative gravitropism 1,3-β-D-glucan biosynthesis detoxification of reactive carbonyls in chloroplasts ESCRT II complex formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex membrane part eukaryotic translation initiation factor 3 complex plant-type vacuole membrane | details |
| TreatCFM001314 | telomere tethering at nuclear periphery posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore cytoplasmic filaments L-serine transport RNA export from nucleus structural constituent of nuclear pore L-serine transmembrane transporter activity nucleocytoplasmic transporter activity protein import into nucleus nuclear localization sequence binding RNA transport Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: WRKY formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular signal transduction | details |
| TreatCFM001739 | Ribosome translational termination translation release factor activity, codon specific mRNA surveillance pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box cytosolic large ribosomal subunit | details |
| TreatCFM001740 | transcription factor TFIID complex Basal transcription factors endosperm development transcription from RNA polymerase II promoter translational initiation regulation of transcription from RNA polymerase II promoter embryo development ending in seed dormancy transcription cofactor activity protein heterodimerization activity translation initiation factor activity heterocyclic compound binding organic cyclic compound binding | details |
| TreatCFM001947 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation regulation of DNA-templated transcription, elongation Ubiquitin_Proteasome_system, E2: UBC nucleobase-containing compound metabolic process Ubiquitin mediated proteolysis regulation of transcription from RNA polymerase II promoter small GTPase mediated signal transduction | details |
| TreatCFM002072 | Measles peptidase activity proteolysis | details |
| TreatCFM002098 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Nucleotide excision repair biosynthetic process Fructose and mannose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |