TreatCFM001766's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyridoxamine-phosphate oxidase activity | 0.005909729 | GO:0004733 |
| anisotropic cell growth | 0.006436646 | GO:0051211 |
| pyridoxal phosphate biosynthetic process | 0.00857839 | GO:0042823 |
| retrograde transport, vesicle recycling within Golgi | 0.00857839 | GO:0000301 |
| alkaloid metabolic process | 0.010287985 | GO:0009820 |
| Golgi organization | 0.010287985 | GO:0007030 |
| Golgi transport complex | 0.020668772 | GO:0017119 |
| cellulose biosynthetic process | 0.020861988 | GO:0030244 |
| FMN binding | 0.02359006 | GO:0010181 |
| ligase activity | 0.046471885 | GO:0016874 |
| oxidation-reduction process | 0.048990721 | GO:0055114 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001337 | AT1G44120 (0) | CSI2|CELLULOSE SYNTHASE INTERACTIVE 2 |
| CRO_T015284 | AT1G60690 (1.00E-100) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T020870 | AT3G59670 (3.00E-79) | unknown protein |
| CRO_T021779 | AT4G15840 (1.00E-97) | BTB/POZ domain-containing protein |
| CRO_T026853 | AT5G16300 (2.00E-09) | Vps51/Vps67 family (components of vesicular transport) protein |
| CRO_T033786 | AT3G21140 (3.00E-17) | Pyridoxamine 5'-phosphate oxidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000089 | ABC transporters photosystem II reaction center | details |
| TreatCFM000738 | Transcription_related, Transcription regulator: MED6 core mediator complex L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) mediator complex Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase 1-aminocyclopropane-1-carboxylate biosynthetic process RNA polymerase II transcriptional preinitiation complex assembly | details |
| TreatCFM001251 | Ubiquitin_Proteasome_system, DUB: OTU glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle carbamoyl-phosphate synthase complex L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational elongation translational frameshifting positive regulation of translational termination pyridoxal phosphate biosynthetic process glycerol-3-phosphate catabolic process cell morphogenesis carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity ion binding glycerol-3-phosphate dehydrogenase [NAD+] activity pyridoxamine-phosphate oxidase activity 'de novo' pyrimidine nucleobase biosynthetic process glycerol-3-phosphate dehydrogenase complex glutamine metabolic process arginine biosynthetic process Glycerophospholipid metabolism Pyrimidine metabolism ribosome binding FMN binding translation elongation factor activity translational initiation | details |
| TreatCFM001259 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII positive regulation of translational termination positive regulation of translational elongation translational frameshifting pyridoxal phosphate biosynthetic process auxin homeostasis auxin efflux pyridoxamine-phosphate oxidase activity auxin efflux transmembrane transporter activity auxin polar transport ribosome binding translation elongation factor activity FMN binding auxin-activated signaling pathway translational initiation | details |
| TreatCFM001344 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII translational frameshifting positive regulation of translational termination positive regulation of translational elongation pyridoxal phosphate biosynthetic process Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: M-type pyridoxamine-phosphate oxidase activity FMN binding translation elongation factor activity ribosome binding | details |
| TreatCFM001767 | farnesol dehydrogenase activity vacuolar membrane farnesol metabolic process ADP binding Terpenoid backbone biosynthesis regulation of signal transduction negative regulation of abscisic acid-activated signaling pathway protein processing coenzyme binding | details |
| TreatCFM001978 | formation of glycosidic bonds, GlycosylTransferases: GTnc xylan biosynthesis transferase activity anisotropic cell growth Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER histone acetylation cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome histone acetyltransferase complex S-adenosylmethionine-dependent methyltransferase activity ligase activity Golgi transport complex spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |