TreatCFM001789's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.005312472 | plantCyc |
| heme biosynthesis I (aerobic) | 0.005312472 | plantCyc |
| uroporphyrinogen decarboxylase activity | 0.006072695 | GO:0004853 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.011059475 | cazy family |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.011059475 | kinase family |
| Transcription_related, Transcription factor: MIKC | 0.011059475 | TF family |
| Transcription_related, Transcription factor: PLATZ | 0.011059475 | TF family |
| Glycerolipid metabolism | 0.014043769 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.014043769 | KEGG pathway |
| chlorophyll biosynthetic process | 0.01556581 | GO:0015995 |
| protoporphyrinogen IX biosynthetic process | 0.01556581 | GO:0006782 |
| single-organism developmental process | 0.01556581 | GO:0044767 |
| single-multicellular organism process | 0.01556581 | GO:0044707 |
| anatomical structure development | 0.01556581 | GO:0048856 |
| glycosyl compound metabolic process | 0.017288956 | GO:1901657 |
| response to cytokinin | 0.025166434 | GO:0009735 |
| beta-glucosidase activity | 0.032318383 | GO:0008422 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003632 | AT1G21000 (2.00E-61) | PLATZ transcription factor family protein |
| CRO_T006534 | AT4G27020 (2.00E-115) | unknown protein |
| CRO_T011764 | AT2G32860 (7.00E-15) | BGLU33|beta glucosidase 33 |
| CRO_T017167 | AT2G40490 (2.00E-171) | HEME2|Uroporphyrinogen decarboxylase |
| CRO_T022802 | AT4G37940 (3.00E-34) | AGL21|AGAMOUS-like 21 |
| CRO_T023292 | AT5G27990 (4.00E-08) | Pre-rRNA-processing protein TSR2, conserved region |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001019 | Alanine, aspartate and glutamate metabolism Transcription_related, Transcription factor: MIKC guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GTP diphosphokinase activity guanosine tetraphosphate metabolic process response to starvation single-multicellular organism process anatomical structure development single-organism developmental process nitrogen compound metabolic process chloroplast | details |
| TreatCFM001257 | Indole alkaloid biosynthesis acetaldehyde biosynthesis I ajmaline and sarpagine biosynthesis detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II scopoletin biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001440 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process Glycerolipid metabolism beta-glucosidase activity nuclear-transcribed mRNA catabolic process Alanine, aspartate and glutamate metabolism carbohydrate metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding cytoplasmic translation nitrogen compound metabolic process ribosomal large subunit assembly rRNA processing transferase activity, transferring acyl groups | details |
Expression profiles
 Show details about module gene expression profiling |