TreatCFM001440's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 1.22E-05 | cazy family |
| glycosyl compound metabolic process | 9.97E-05 | GO:1901657 |
| Glycerolipid metabolism | 0.000112042 | KEGG pathway |
| beta-glucosidase activity | 0.000202904 | GO:0008422 |
| nuclear-transcribed mRNA catabolic process | 0.003218323 | GO:0000956 |
| Alanine, aspartate and glutamate metabolism | 0.003454893 | KEGG pathway |
| carbohydrate metabolic process | 0.004724543 | GO:0005975 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.005212381 | GO:0016810 |
| large ribosomal subunit rRNA binding | 0.00955109 | GO:0070180 |
| cytoplasmic translation | 0.014990015 | GO:0002181 |
| nitrogen compound metabolic process | 0.014990015 | GO:0006807 |
| ribosomal large subunit assembly | 0.014990015 | GO:0000027 |
| rRNA processing | 0.018795937 | GO:0006364 |
| transferase activity, transferring acyl groups | 0.034407233 | GO:0016746 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005571 | AT5G36890 (7.00E-15) | BGLU42|beta glucosidase 42 |
| CRO_T006534 | AT4G27020 (2.00E-115) | unknown protein |
| CRO_T009019 | AT1G25260 (3.00E-92) | Ribosomal protein L10 family protein |
| CRO_T011764 | AT2G32860 (7.00E-15) | BGLU33|beta glucosidase 33 |
| CRO_T012214 | - | - |
| CRO_T025855 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000295 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding cytoplasmic translation ribosomal large subunit assembly rRNA processing Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: MYB-related preribosome, large subunit precursor Transcription_related, Transcription factor: C2H2 cytosolic large ribosomal subunit nucleolus | details |
| TreatCFM001019 | Alanine, aspartate and glutamate metabolism Transcription_related, Transcription factor: MIKC guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GTP diphosphokinase activity guanosine tetraphosphate metabolic process response to starvation single-multicellular organism process anatomical structure development single-organism developmental process nitrogen compound metabolic process chloroplast | details |
| TreatCFM001257 | Indole alkaloid biosynthesis acetaldehyde biosynthesis I ajmaline and sarpagine biosynthesis detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II scopoletin biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001439 | Alanine, aspartate and glutamate metabolism nuclear-transcribed mRNA catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycerolipid metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding nitrogen compound metabolic process glycosyl compound metabolic process ribosomal large subunit assembly cytoplasmic translation rRNA processing beta-glucosidase activity | details |
| TreatCFM001441 | UTP-C complex CURI complex tRNA export from nucleus hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET glycosyl compound metabolic process rRNA processing RNA secondary structure unwinding Glycerolipid metabolism Ribosome biogenesis in eukaryotes small-subunit processome beta-glucosidase activity ATP-dependent RNA helicase activity | details |
| TreatCFM001574 | Transcription_related, Transcription regulator: Rcd1-like hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds CCR4-NOT core complex DNA-templated transcription, initiation negative regulation of translation nitrogen compound metabolic process cellular protein metabolic process Alanine, aspartate and glutamate metabolism cytoplasmic mRNA processing body Basal transcription factors RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc protein heterodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001613 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family ErbB signaling pathway trans, trans-farnesyl diphosphate biosynthesis methylerythritol phosphate pathway I methylerythritol phosphate pathway II mevalonate pathway I cytosol nuclear-transcribed mRNA catabolic process peptidyl-diphthamide biosynthetic process from peptidyl-histidine positive regulation of ubiquitin-protein transferase activity regulation of mitotic cell cycle ubiquitin-like protein binding cullin family protein binding diphthine synthase activity SUMO activating enzyme activity protein neddylation histone acetyltransferase activity ubiquitin conjugating enzyme binding large ribosomal subunit rRNA binding lipase activity protein sumoylation Ubiquitin mediated proteolysis histone acetylation ribosomal large subunit assembly cytoplasmic translation | details |
| TreatCFM001614 | ncRNA metabolic process nuclear-transcribed mRNA catabolic process mRNA catabolic process rRNA modification large ribosomal subunit rRNA binding lipase activity snoRNA binding nuclease activity Ribosome biogenesis in eukaryotes ribosomal large subunit assembly cytoplasmic translation box C/D snoRNP complex macromolecular complex rRNA processing lipid metabolic process preribosome, large subunit precursor | details |
| TreatCFM001789 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) uroporphyrinogen decarboxylase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: MIKC Transcription_related, Transcription factor: PLATZ Glycerolipid metabolism Porphyrin and chlorophyll metabolism chlorophyll biosynthetic process protoporphyrinogen IX biosynthetic process single-organism developmental process single-multicellular organism process anatomical structure development glycosyl compound metabolic process response to cytokinin beta-glucosidase activity | details |
| TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
Expression profiles
 Show details about module gene expression profiling |