TreatCFM001800's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| proteasome regulatory particle, lid subcomplex | 0.006072695 | GO:0008541 |
| proteasome assembly | 0.011259969 | GO:0043248 |
| glycerophospholipid biosynthetic process | 0.011259969 | GO:0046474 |
| DNA-3-methyladenine glycosylase activity | 0.014165434 | GO:0008725 |
| structural molecule activity | 0.018197904 | GO:0005198 |
| base-excision repair | 0.021426969 | GO:0006284 |
| Base excision repair | 0.022357933 | KEGG pathway |
| Proteasome | 0.022357933 | KEGG pathway |
| glutathione transferase activity | 0.024712705 | GO:0004364 |
| protein disulfide oxidoreductase activity | 0.024712705 | GO:0015035 |
| Ubiquitin mediated proteolysis | 0.030030165 | KEGG pathway |
| glutathione metabolic process | 0.032092996 | GO:0006749 |
| electron carrier activity | 0.036602285 | GO:0009055 |
| cell redox homeostasis | 0.040543164 | GO:0045454 |
| ubiquitin-dependent protein catabolic process | 0.040543164 | GO:0006511 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008245 | AT5G44680 (6.00E-106) | DNA glycosylase superfamily protein |
| CRO_T019846 | AT4G19006 (2.00E-160) | Proteasome component (PCI) domain protein |
| CRO_T023288 | AT4G10000 (8.00E-104) | Thioredoxin family protein |
| CRO_T028643 | - | - |
| CRO_T030365 | AT1G12330 (3.00E-119) | unknown protein |
| CRO_T032104 | AT3G45740 (2.00E-87) | hydrolase family protein / HAD-superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000729 | Hedgehog signaling pathway Base excision repair Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box DNA-3-methyladenine glycosylase activity glycerol ether metabolic process cellular response to oxidative stress base-excision repair sulfate assimilation rRNA processing oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity | details |
| TreatCFM001083 | protein homodimerization activity transport of virus in host, tissue to tissue protein-phycocyanobilin linkage cellular response to virus entrainment of circadian clock proteasome assembly gametophyte development regulation of cell division plastid organization shikimate metabolic process response to reactive oxygen species photoreceptor activity shikimate kinase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity proteasome regulatory particle, lid subcomplex chloroplast fission aromatic amino acid family biosynthetic process peptidyl-lysine monomethylation DNA-templated transcription, initiation response to UV-B Glucagon signaling pathway phenylpropanoids methylation (ice plant) syringetin biosynthesis chloroplast outer membrane chromatin 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity myricetin 3'-O-methyltransferase activity protein-lysine N-methyltransferase activity alkaloid biosynthetic process structural molecule activity aromatic compound biosynthetic process | details |
| TreatCFM001173 | Antigen processing and presentation Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase protein acetyltransferase complex signal transduction by protein phosphorylation N-terminal protein amino acid acetylation phosphorelay signal transduction system phosphorelay sensor kinase activity peptide alpha-N-acetyltransferase activity | details |
| TreatCFM001241 | proteasome regulatory particle, lid subcomplex cuticle development proteasome assembly plastid organization shikimate metabolic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof DNA-3-methyladenine glycosylase activity shikimate kinase activity base-excision repair structural molecule activity rRNA processing Base excision repair Proteasome ubiquitin-dependent protein catabolic process | details |
| TreatCFM001563 | mitochondrial translation nonaprenyl diphosphate biosynthesis II DNA-templated transcription, termination enzyme-directed rRNA pseudouridine synthesis dimethylallyltranstransferase activity aminoacyl-tRNA hydrolase activity RNA binding pseudouridine synthase activity Terpenoid backbone biosynthesis isoprenoid biosynthetic process chloroplast mitochondrial large ribosomal subunit amyloplast | details |
| TreatCFM002109 | 3'-tRNA processing endoribonuclease activity tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleoside diphosphate metabolic process RNA splicing, via transesterification reactions proteasome regulatory particle, lid subcomplex proteasome assembly deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex structural molecule activity regulation of flower development Transcription_related, Transcription factor: MYB multicellular organism development ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |