TreatCFM001839's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA polyadenylation | 0.001877105 | GO:0043631 |
| protein import into mitochondrial intermembrane space | 0.001877105 | GO:0045041 |
| RNA 3'-end processing | 0.001877105 | GO:0031123 |
| mitochondrial fusion | 0.001877105 | GO:0008053 |
| mitochondrial protein processing | 0.001877105 | GO:0034982 |
| protein complex assembly | 0.001877105 | GO:0006461 |
| cristae formation | 0.002145073 | GO:0042407 |
| polynucleotide adenylyltransferase activity | 0.026270156 | GO:0004652 |
| mRNA surveillance pathway | 0.028320139 | KEGG pathway |
| Photosynthesis | 0.028320139 | KEGG pathway |
| ATP-dependent peptidase activity | 0.039283159 | GO:0004176 |
| metalloendopeptidase activity | 0.039283159 | GO:0004222 |
| nucleotidyltransferase activity | 0.039283159 | GO:0016779 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004677 | AT2G15970 (3.00E-43) | ATCOR413-PM1|COLD-REGULATED413 PLASMA MEMBRANE 1; ATCYP19|CYCLOPHILLIN 19; COR413-PM1|cold regulated 413 plasma membrane 1 |
| CRO_T006316 | AT1G80930 (1.00E-92) | MIF4G domain-containing protein / MA3 domain-containing protein |
| CRO_T007504 | AT1G60950 (5.00E-35) | ATFD2|FERREDOXIN 2 |
| CRO_T013354 | AT5G22040 (8.00E-34) | unknown protein |
| CRO_T017546 | AT3G61690 (7.00E-151) | nucleotidyltransferases |
| CRO_T027291 | AT1G07510 (0) | ftsh10|FTSH protease 10 |
| CRO_T030667 | AT2G25850 (0) | PAPS2|poly(A) polymerase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM001840 | GABAergic synapse amino acid transmembrane transporter activity amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: Josephin integral component of membrane vacuolar membrane 1-acylglycerol-3-phosphate O-acyltransferase activity aromatic amino acid family metabolic process Tyrosine metabolism phospholipid biosynthetic process glutathione transferase activity CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis glutathione metabolic process Photosynthesis | details |
| TreatCFM001947 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation regulation of DNA-templated transcription, elongation Ubiquitin_Proteasome_system, E2: UBC nucleobase-containing compound metabolic process Ubiquitin mediated proteolysis regulation of transcription from RNA polymerase II promoter small GTPase mediated signal transduction | details |
| TreatCFM001948 | protein complex assembly protein import into mitochondrial intermembrane space mitochondrial protein processing mitochondrial fusion cristae formation Ubiquitin_Proteasome_system, E2: UBC Photosynthesis Ubiquitin mediated proteolysis nucleotidyltransferase activity metalloendopeptidase activity ATP-dependent peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |