TreatCFM001948's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein complex assembly | 0.001518174 | GO:0006461 |
| protein import into mitochondrial intermembrane space | 0.001518174 | GO:0045041 |
| mitochondrial protein processing | 0.001518174 | GO:0034982 |
| mitochondrial fusion | 0.001518174 | GO:0008053 |
| cristae formation | 0.001619266 | GO:0042407 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.007249122 | ubs family |
| Photosynthesis | 0.024570135 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.024570135 | KEGG pathway |
| nucleotidyltransferase activity | 0.036384367 | GO:0016779 |
| metalloendopeptidase activity | 0.036384367 | GO:0004222 |
| ATP-dependent peptidase activity | 0.036384367 | GO:0004176 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007504 | AT1G60950 (5.00E-35) | ATFD2|FERREDOXIN 2 |
| CRO_T011510 | AT1G26355 (3.00E-16) | SP1L1|SPIRAL1-like1 |
| CRO_T013898 | AT1G36340 (1.00E-22) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T015545 | AT1G03370 (0) | C2 calcium/lipid-binding and GRAM domain containing protein |
| CRO_T017546 | AT3G61690 (7.00E-151) | nucleotidyltransferases |
| CRO_T027291 | AT1G07510 (0) | ftsh10|FTSH protease 10 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001342 | intra-Golgi vesicle-mediated transport Nucleotide excision repair Basal transcription factors formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM001611 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, E2: UBC Viral carcinogenesis Ubiquitin mediated proteolysis protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway intracellular signal transduction | details |
| TreatCFM001839 | RNA polyadenylation protein import into mitochondrial intermembrane space RNA 3'-end processing mitochondrial fusion mitochondrial protein processing protein complex assembly cristae formation polynucleotide adenylyltransferase activity mRNA surveillance pathway Photosynthesis ATP-dependent peptidase activity metalloendopeptidase activity nucleotidyltransferase activity | details |
| TreatCFM001840 | GABAergic synapse amino acid transmembrane transporter activity amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: Josephin integral component of membrane vacuolar membrane 1-acylglycerol-3-phosphate O-acyltransferase activity aromatic amino acid family metabolic process Tyrosine metabolism phospholipid biosynthetic process glutathione transferase activity CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis glutathione metabolic process Photosynthesis | details |
| TreatCFM001929 | Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis microtubule proteolysis | details |
| TreatCFM001947 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation regulation of DNA-templated transcription, elongation Ubiquitin_Proteasome_system, E2: UBC nucleobase-containing compound metabolic process Ubiquitin mediated proteolysis regulation of transcription from RNA polymerase II promoter small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |