TreatCFM001863's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xyloglucan biosynthesis | 0.003011068 | plantCyc |
| cotyledon development | 0.007361202 | GO:0048825 |
| negative regulation of photomorphogenesis | 0.007361202 | GO:0010100 |
| hormone-mediated signaling pathway | 0.007361202 | GO:0009755 |
| short-day photoperiodism, flowering | 0.007361202 | GO:0048575 |
| sugar mediated signaling pathway | 0.011773572 | GO:0010182 |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 0.01364139 | ubs family |
| photomorphogenesis | 0.015691138 | GO:0009640 |
| Cul4-RING E3 ubiquitin ligase complex | 0.01624335 | GO:0080008 |
| Ubiquitin mediated proteolysis | 0.01638009 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.017025301 | cazy family |
| flower development | 0.021839371 | GO:0009908 |
| protein polyubiquitination | 0.024241761 | GO:0000209 |
| Transcription_related, Transcription factor: HB | 0.024250095 | TF family |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.031958061 | GO:0042787 |
| DNA repair | 0.038108942 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002679 | AT4G40060 (5.00E-32) | ATHB16|homeobox protein 16 |
| CRO_T006277 | AT4G08685 (2.00E-30) | SAH7|Pollen Ole e 1 allergen and extensin family protein |
| CRO_T007818 | AT1G02816 (6.00E-07) | Protein of unknown function, DUF538 |
| CRO_T019544 | AT5G62220 (1.00E-129) | ATGT18|glycosyltransferase 18; XLT2|Xyloglucan L-side chain galactosylTransferase position 2 |
| CRO_T025008 | AT5G11970 (5.00E-18) | Protein of unknown function (DUF3511) |
| CRO_T028082 | AT1G26830 (6.00E-52) | ATCUL3|cullin 3; ATCUL3A|cullin 3A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001864 | Transcription_related, Transcription factor: DBP Ubiquitin_Proteasome_system, E3 adaptor: Cullin negative regulation of photomorphogenesis short-day photoperiodism, flowering cotyledon development hormone-mediated signaling pathway sugar mediated signaling pathway Ubiquitin mediated proteolysis photomorphogenesis cation binding phosphoprotein phosphatase activity ubiquitin protein ligase binding Cul4-RING E3 ubiquitin ligase complex flower development protein polyubiquitination ubiquitin protein ligase activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process cell | details |
Expression profiles
 Show details about module gene expression profiling |