TreatCFM001864's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: DBP | 0.002836251 | TF family |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 0.004958307 | ubs family |
| negative regulation of photomorphogenesis | 0.011000716 | GO:0010100 |
| short-day photoperiodism, flowering | 0.011000716 | GO:0048575 |
| cotyledon development | 0.011000716 | GO:0048825 |
| hormone-mediated signaling pathway | 0.011000716 | GO:0009755 |
| sugar mediated signaling pathway | 0.017592045 | GO:0010182 |
| Ubiquitin mediated proteolysis | 0.02177964 | KEGG pathway |
| photomorphogenesis | 0.023441509 | GO:0009640 |
| cation binding | 0.025581215 | GO:0043169 |
| phosphoprotein phosphatase activity | 0.02941928 | GO:0004721 |
| ubiquitin protein ligase binding | 0.02941928 | GO:0031625 |
| Cul4-RING E3 ubiquitin ligase complex | 0.029660667 | GO:0080008 |
| flower development | 0.032616924 | GO:0009908 |
| protein polyubiquitination | 0.036197394 | GO:0000209 |
| ubiquitin protein ligase activity | 0.044890993 | GO:0061630 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.047696721 | GO:0042787 |
| cell | 0.049749907 | GO:0005623 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001960 | AT2G25070 (2.00E-27) | Protein phosphatase 2C family protein |
| CRO_T007262 | AT4G08510 (1.00E-27) | unknown protein |
| CRO_T021888 | AT3G54950 (1.00E-88) | PLA IIIA|patatin-like protein 6; PLP7|PATATIN-LIKE PROTEIN 7; pPLAIIIbeta|patatin-related phospholipase IIIbeta |
| CRO_T022679 | AT5G66410 (2.00E-32) | PLP3b|phosducin-like protein 3 homolog |
| CRO_T028082 | AT1G26830 (6.00E-52) | ATCUL3|cullin 3; ATCUL3A|cullin 3A |
| CRO_T030069 | AT2G02170 (3.00E-90) | Remorin family protein |
| CRO_T031251 | AT5G48720 (1.00E-43) | XRI|X-RAY INDUCED TRANSCRIPT; XRI1|X-RAY INDUCED TRANSCRIPT 1 |
| CRO_T033389 | AT2G38360 (7.00E-16) | PRA1.B4|prenylated RAB acceptor 1.B4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001311 | Valine, leucine and isoleucine degradation L-leucine degradation I Transcription_related, Transcription factor: DBP Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X cation binding phosphorylation phosphoprotein phosphatase activity | details |
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001473 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity intramolecular transferase activity cation binding Amino sugar and nucleotide sugar metabolism phosphoprotein phosphatase activity cellulose biosynthetic process carbohydrate transport cell cell redox homeostasis | details |
| TreatCFM001546 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process Transcription_related, Transcription factor: DBP succinate-CoA ligase (GDP-forming) activity succinate-CoA ligase (ADP-forming) activity cofactor binding coniferin metabolism TCA cycle II (plants and fungi) xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc cation binding tricarboxylic acid cycle mitochondrial matrix phosphoprotein phosphatase activity helicase activity | details |
| TreatCFM001547 | Transcription_related, Transcription factor: DBP coniferin metabolism xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism carbohydrate metabolic process | details |
| TreatCFM001863 | xyloglucan biosynthesis cotyledon development negative regulation of photomorphogenesis hormone-mediated signaling pathway short-day photoperiodism, flowering sugar mediated signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis Cul4-RING E3 ubiquitin ligase complex Ubiquitin mediated proteolysis formation of glycosidic bonds, GlycosylTransferases: GTnc flower development protein polyubiquitination Transcription_related, Transcription factor: HB protein ubiquitination involved in ubiquitin-dependent protein catabolic process DNA repair | details |
| TreatCFM002005 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family intracellular distribution of mitochondria translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |