TreatCFM001868's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellular response to nitrogen levels | 0.002843595 | GO:0043562 |
| response to sucrose | 0.002843595 | GO:0009744 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.002892987 | cazy family |
| Apelin signaling pathway | 0.004748974 | KEGG pathway |
| kinase activity | 0.036852946 | GO:0016301 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000683 | AT5G58100 (0) | unknown protein |
| CRO_T001013 | - | - |
| CRO_T003665 | AT5G21170 (2.00E-28) | AKINBETA1|5'-AMP-activated protein kinase beta-2 subunit protein |
| CRO_T007990 | AT2G41990 (1.00E-46) | |
| CRO_T019110 | AT1G14670 (0) | Endomembrane protein 70 protein family |
| CRO_T023508 | AT1G42440 (7.00E-127) | unknown protein |
| CRO_T033765 | AT2G39580 (1.00E-27) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001594 | positive regulation of translational fidelity rRNA processing Mpp10 complex cytosolic small ribosomal subunit small-subunit processome viral nucleocapsid snoRNA binding Ribosome biogenesis in eukaryotes RNA transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001595 | regulation of signal transduction protein processing RNA transport | details |
| TreatCFM001646 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome cellular response to nitrogen levels response to sucrose exon-exon junction complex nuclear body Apelin signaling pathway mRNA binding RNA processing Spliceosome | details |
| TreatCFM001647 | RNA processing cellular response to nitrogen levels response to sucrose regulation of alternative mRNA splicing, via spliceosome nuclear-transcribed mRNA catabolic process, nonsense-mediated decay exon-exon junction complex nuclear body adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Apelin signaling pathway | details |
| TreatCFM001714 | ribosomal large subunit assembly | details |
| TreatCFM001715 | γ-glutamyl cycle nuclear export signal receptor activity glucan 1,3-alpha-glucosidase activity protein export from nucleus protein import into nucleus ribosomal large subunit assembly Ran GTPase binding N-Glycan biosynthesis | details |
| TreatCFM001874 | thioredoxin pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: AUX/IAA Apelin signaling pathway response to sucrose cellular response to nitrogen levels response to cold Plant hormone signal transduction | details |
| TreatCFM001938 | Cell cycle DNA replication mRNA surveillance pathway | details |
| TreatCFM002017 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway protein export from nucleus response to sucrose protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly aspartate family amino acid biosynthetic process phosphorylation alkane biosynthetic process iron-sulfur transferase activity nuclear export signal receptor activity aspartate kinase activity ferrous iron binding homoserine dehydrogenase activity Apelin signaling pathway protein import into nucleus cellular amino acid biosynthetic process Ran GTPase binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding amino acid binding phosphoprotein phosphatase activity NADP binding Biosynthesis of amino acids nuclear envelope | details |
| TreatCFM002018 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cellular iron ion homeostasis cellular response to nitrogen levels response to sucrose [2Fe-2S] cluster assembly protein maturation by iron-sulfur cluster transfer iron-sulfur transferase activity Apelin signaling pathway core mediator complex mediator complex mitochondrial matrix ferrous iron binding ribosomal large subunit assembly RNA polymerase II transcription cofactor activity cytosolic large ribosomal subunit regulation of transcription from RNA polymerase II promoter 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding | details |
| TreatCFM002019 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cuticle hydrocarbon biosynthetic process protein maturation by iron-sulfur cluster transfer cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly response to sucrose alkane biosynthetic process iron-sulfur transferase activity Apelin signaling pathway mitochondrial matrix ferrous iron binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity | details |
| TreatCFM002027 | γ-glutamyl cycle glucan 1,3-alpha-glucosidase activity alkane biosynthetic process cuticle hydrocarbon biosynthetic process N-Glycan biosynthesis cell periphery carbohydrate binding cytoplasmic part single-organism process | details |
| TreatCFM002070 | vacuolar membrane integral component of membrane Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: mTERF potassium ion transmembrane transporter activity inorganic diphosphatase activity hydrogen-translocating pyrophosphatase activity exocyst localization cell tip growth regulation of signal transduction SNARE binding protein processing response to salt stress exocytosis potassium ion transmembrane transport proton transport | details |
Expression profiles
 Show details about module gene expression profiling |