TreatCFM002018's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.002480253 | cazy family |
| Glucagon signaling pathway | 0.004875166 | KEGG pathway |
| cellular iron ion homeostasis | 0.00726834 | GO:0006879 |
| cellular response to nitrogen levels | 0.00726834 | GO:0043562 |
| response to sucrose | 0.00726834 | GO:0009744 |
| [2Fe-2S] cluster assembly | 0.00726834 | GO:0044571 |
| protein maturation by iron-sulfur cluster transfer | 0.00726834 | GO:0097428 |
| iron-sulfur transferase activity | 0.01038718 | GO:0036455 |
| Apelin signaling pathway | 0.011197978 | KEGG pathway |
| core mediator complex | 0.011815964 | GO:0070847 |
| mediator complex | 0.019157014 | GO:0016592 |
| mitochondrial matrix | 0.019157014 | GO:0005759 |
| ferrous iron binding | 0.020765151 | GO:0008198 |
| ribosomal large subunit assembly | 0.023328023 | GO:0000027 |
| RNA polymerase II transcription cofactor activity | 0.027670507 | GO:0001104 |
| cytosolic large ribosomal subunit | 0.031208123 | GO:0022625 |
| regulation of transcription from RNA polymerase II promoter | 0.035492355 | GO:0006357 |
| 2 iron, 2 sulfur cluster binding | 0.038828367 | GO:0051537 |
| phosphoprotein phosphatase activity | 0.038828367 | GO:0004721 |
| 4 iron, 4 sulfur cluster binding | 0.038828367 | GO:0051539 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003665 | AT5G21170 (2.00E-28) | AKINBETA1|5'-AMP-activated protein kinase beta-2 subunit protein |
| CRO_T003848 | AT1G26665 (4.00E-43) | Mediator complex, subunit Med10 |
| CRO_T008051 | - | - |
| CRO_T008075 | AT2G42810 (1.00E-43) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T021143 | AT2G39460 (2.00E-30) | ATRPL23A|RIBOSOMAL PROTEIN L23A; RPL23A1|RIBOSOMAL PROTEIN L23A1; RPL23AA|ribosomal protein L23AA |
| CRO_T030691 | AT4G22220 (3.00E-64) | ATISU1; ISU1|SufE/NifU family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001023 | L-homoserine biosynthesis L-lysine biosynthesis VI sesaminol glucoside biosynthesis threonine biosynthetic process methionine biosynthetic process isoleucine biosynthetic process core mediator complex homoserine dehydrogenase activity aspartate kinase activity mediator complex proton-transporting ATP synthase complex, catalytic core F(1) RNA polymerase II transcription cofactor activity proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism transferase activity, transferring hexosyl groups amino acid binding NADP binding ATP hydrolysis coupled proton transport ribosomal large subunit assembly ATP synthesis coupled proton transport regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001646 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome cellular response to nitrogen levels response to sucrose exon-exon junction complex nuclear body Apelin signaling pathway mRNA binding RNA processing Spliceosome | details |
| TreatCFM001647 | RNA processing cellular response to nitrogen levels response to sucrose regulation of alternative mRNA splicing, via spliceosome nuclear-transcribed mRNA catabolic process, nonsense-mediated decay exon-exon junction complex nuclear body adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Apelin signaling pathway | details |
| TreatCFM001714 | ribosomal large subunit assembly | details |
| TreatCFM001715 | γ-glutamyl cycle nuclear export signal receptor activity glucan 1,3-alpha-glucosidase activity protein export from nucleus protein import into nucleus ribosomal large subunit assembly Ran GTPase binding N-Glycan biosynthesis | details |
| TreatCFM001774 | Glucagon signaling pathway [2Fe-2S] cluster assembly protein export from nucleus cellular iron ion homeostasis alkane biosynthetic process RNA polymerase II transcriptional preinitiation complex assembly protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process histone acetyltransferase binding transcription factor binding nuclear export signal receptor activity iron-sulfur transferase activity ferrous iron binding Basal transcription factors transcription factor TFIID complex transcription coactivator activity transcription regulatory region DNA binding protein import into nucleus Ran GTPase binding nuclear envelope 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding regulation of transcription from RNA polymerase II promoter mitochondrial matrix embryo development ending in seed dormancy protein dephosphorylation | details |
| TreatCFM001868 | cellular response to nitrogen levels response to sucrose adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Apelin signaling pathway kinase activity | details |
| TreatCFM001874 | thioredoxin pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: AUX/IAA Apelin signaling pathway response to sucrose cellular response to nitrogen levels response to cold Plant hormone signal transduction | details |
| TreatCFM002015 | Glucagon signaling pathway mucilage biosynthetic process involved in seed coat development positive regulation of kinase activity maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular response to stress regulation of translation plasmodesma PeBoW complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of protein kinase activity vesicle docking involved in exocytosis ribonucleoprotein complex binding protein kinase regulator activity Ubiquitin_Proteasome_system, E2: UBC nucleoplasm preribosome, large subunit precursor exocyst protein kinase binding ribosome binding signal transducer activity nucleotidyltransferase activity phosphoprotein phosphatase activity protein transport DNA replication | details |
| TreatCFM002017 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway protein export from nucleus response to sucrose protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly aspartate family amino acid biosynthetic process phosphorylation alkane biosynthetic process iron-sulfur transferase activity nuclear export signal receptor activity aspartate kinase activity ferrous iron binding homoserine dehydrogenase activity Apelin signaling pathway protein import into nucleus cellular amino acid biosynthetic process Ran GTPase binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding amino acid binding phosphoprotein phosphatase activity NADP binding Biosynthesis of amino acids nuclear envelope | details |
| TreatCFM002019 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cuticle hydrocarbon biosynthetic process protein maturation by iron-sulfur cluster transfer cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly response to sucrose alkane biosynthetic process iron-sulfur transferase activity Apelin signaling pathway mitochondrial matrix ferrous iron binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity | details |
Expression profiles
 Show details about module gene expression profiling |