TreatCFM001894's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter | 0.001723849 | GO:0001193 |
| transcription-coupled nucleotide-excision repair | 0.001723849 | GO:0006283 |
| transcription initiation from RNA polymerase II promoter | 0.00574209 | GO:0006367 |
| Transcription_related, Transcription regulator: mTERF | 0.018571412 | TF family |
| Transcription_related, Transcription factor: C2H2 | 0.024040353 | TF family |
| DNA-directed RNA polymerase II, core complex | 0.024108225 | GO:0005665 |
| double-stranded DNA binding | 0.03949418 | GO:0003690 |
| DNA-directed RNA polymerase activity | 0.03949418 | GO:0003899 |
| Purine metabolism | 0.046541824 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.046541824 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003690 | - | - |
| CRO_T009846 | AT1G78930 (3.00E-19) | Mitochondrial transcription termination factor family protein |
| CRO_T019924 | AT2G20490 (2.00E-20) | EDA27|EMBRYO SAC DEVELOPMENT ARREST 27 |
| CRO_T024630 | AT4G26620 (2.00E-17) | Sucrase/ferredoxin-like family protein |
| CRO_T026269 | AT1G03840 (2.00E-88) | MGP|Magpie |
| CRO_T029598 | AT5G27460 (9.00E-107) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T032823 | AT4G16265 (1.00E-56) | NRPB9B; NRPD9B; NRPE9B|RNA polymerases M/15 Kd subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000687 | bisbenzylisoquinoline alkaloid biosynthesis magnoflorine biosynthesis nuclear outer membrane-endoplasmic reticulum membrane network AP-3 adaptor complex detoxification of copper ion copper ion export hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001051 | 3-deoxy-7-phosphoheptulonate synthase activity UMP kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide phosphorylation pyrimidine nucleotide biosynthetic process aromatic amino acid family biosynthetic process RNA metabolic process 3-dehydroquinate biosynthesis I UTP and CTP de novo biosynthesis xylan biosynthesis cellulose biosynthesis pyrimidine ribonucleotides interconversion Pyrimidine metabolism Biosynthesis of amino acids | details |
| TreatCFM001066 | UMP kinase activity 3-deoxy-7-phosphoheptulonate synthase activity chloroplast nucleoid Elongator holoenzyme complex 3-dehydroquinate biosynthesis I sucrose degradation III (sucrose invertase) UTP and CTP de novo biosynthesis phosphotransferase activity, alcohol group as acceptor pyrimidine nucleotide biosynthetic process RNA metabolic process etioplast organization aromatic amino acid family biosynthetic process transcription from plastid promoter nucleotide phosphorylation pyrimidine ribonucleotides interconversion Pyrimidine metabolism nucleotidyltransferase activity chloroplast organization Biosynthesis of amino acids chloroplast thylakoid RNA processing | details |
| TreatCFM001215 | glycolytic process sucrose biosynthesis I (from photosynthesis) gluconeogenesis I glycolysis I (from glucose 6-phosphate) gluconeogenesis glucose-6-phosphate isomerase activity phosphatidate phosphatase activity fructose-bisphosphate aldolase activity Carbon metabolism Indole alkaloid biosynthesis GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis II ajmaline and sarpagine biosynthesis Calvin-Benson-Bassham cycle diacylglycerol and triacylglycerol biosynthesis glycolysis IV (plant cytosol) Glycerolipid metabolism Ribosome biogenesis in eukaryotes | details |
| TreatCFM001603 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase secologanin and strictosidine biosynthesis receptor-mediated endocytosis scavenger receptor activity protein tyrosine kinase activity sinapyl alcohol dehydrogenase activity abscisic acid binding cinnamyl-alcohol dehydrogenase activity transmembrane transporter activity Galactose metabolism | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001943 | cellulose biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: GNAT Transcription_related, Transcription regulator: mTERF male meiosis cytokinesis embryo sac cellularization radial microtubular system formation singlet oxygen-mediated programmed cell death cell plate assembly megagametogenesis pollen tube phragmoplast nucleus thylakoid membrane post-embryonic development regulation of transcription, DNA-templated pollen development rRNA processing cellulose biosynthetic process RNA secondary structure unwinding microtubule-based movement kinesin complex | details |
Expression profiles
 Show details about module gene expression profiling |