TreatCFM001215's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glycolytic process | 5.51E-05 | GO:0006096 |
| sucrose biosynthesis I (from photosynthesis) | 0.000403872 | plantCyc |
| gluconeogenesis I | 0.000413544 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000413544 | plantCyc |
| gluconeogenesis | 0.002658199 | GO:0006094 |
| glucose-6-phosphate isomerase activity | 0.003938655 | GO:0004347 |
| phosphatidate phosphatase activity | 0.003938655 | GO:0008195 |
| fructose-bisphosphate aldolase activity | 0.003938655 | GO:0004332 |
| Carbon metabolism | 0.007878995 | KEGG pathway |
| Indole alkaloid biosynthesis | 0.008859354 | KEGG pathway |
| GDP-mannose biosynthesis | 0.01647813 | plantCyc |
| sucrose degradation III (sucrose invertase) | 0.01647813 | plantCyc |
| starch biosynthesis | 0.021000947 | plantCyc |
| sucrose biosynthesis II | 0.021000947 | plantCyc |
| ajmaline and sarpagine biosynthesis | 0.022850809 | plantCyc |
| Calvin-Benson-Bassham cycle | 0.022850809 | plantCyc |
| diacylglycerol and triacylglycerol biosynthesis | 0.025615775 | plantCyc |
| glycolysis IV (plant cytosol) | 0.025615775 | plantCyc |
| Glycerolipid metabolism | 0.026006979 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.031208123 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T016680 | AT5G42870 (8.00E-53) | ATPAH2|PHOSPHATIDIC ACID PHOSPHOHYDROLASE 2 |
| CRO_T019924 | AT2G20490 (2.00E-20) | EDA27|EMBRYO SAC DEVELOPMENT ARREST 27 |
| CRO_T024505 | - | - |
| CRO_T026246 | AT2G01140 (0) | FBA3|fructose-bisphosphate aldolase 3; PDE345|PIGMENT DEFECTIVE 345 |
| CRO_T030883 | AT2G23610 (2.00E-54) | ATMES3|METHYL ESTERASE 3 |
| CRO_T032432 | AT4G24620 (2.00E-161) | PGI1|phosphoglucose isomerase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM000687 | bisbenzylisoquinoline alkaloid biosynthesis magnoflorine biosynthesis nuclear outer membrane-endoplasmic reticulum membrane network AP-3 adaptor complex detoxification of copper ion copper ion export hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001060 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase L-glutamine biosynthesis III TCA cycle II (plants and fungi) isocitrate dehydrogenase (NAD+) activity diacylglycerol and triacylglycerol biosynthesis Group II intron splicing phosphatidate phosphatase activity receptor signaling protein serine/threonine kinase activity chloroplast organization regulation of gene expression tricarboxylic acid cycle Glycerolipid metabolism Photosynthesis | details |
| TreatCFM001061 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase dioxygenase activity ferrochelatase activity isocitrate dehydrogenase (NAD+) activity heme biosynthetic process phosphatidate phosphatase activity receptor signaling protein serine/threonine kinase activity flavonoid biosynthesis (in equisetum) flavonol biosynthesis heme biosynthesis I (aerobic) L-glutamine biosynthesis III syringetin biosynthesis TCA cycle II (plants and fungi) diacylglycerol and triacylglycerol biosynthesis tricarboxylic acid cycle Glycerolipid metabolism Porphyrin and chlorophyll metabolism | details |
| TreatCFM001603 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase secologanin and strictosidine biosynthesis receptor-mediated endocytosis scavenger receptor activity protein tyrosine kinase activity sinapyl alcohol dehydrogenase activity abscisic acid binding cinnamyl-alcohol dehydrogenase activity transmembrane transporter activity Galactose metabolism | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001894 | maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter transcription-coupled nucleotide-excision repair transcription initiation from RNA polymerase II promoter Transcription_related, Transcription regulator: mTERF Transcription_related, Transcription factor: C2H2 DNA-directed RNA polymerase II, core complex double-stranded DNA binding DNA-directed RNA polymerase activity Purine metabolism Ribosome biogenesis in eukaryotes | details |
| TreatCFM002141 | NADP biosynthetic process phosphorylation NAD metabolic process isopentenyl diphosphate biosynthetic process, mevalonate pathway heme biosynthetic process diphosphomevalonate decarboxylase activity NAD+ kinase activity Indole alkaloid biosynthesis Nicotinate and nicotinamide metabolism heme biosynthesis I (aerobic) mevalonate pathway I 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) ajmaline and sarpagine biosynthesis NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription factor: MYB chloroplast part Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis | details |
| TreatCFM002151 | formation of glycosidic bonds, GlycosylTransferases: GTnc dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity dolichol metabolic process singlet oxygen-mediated programmed cell death protein O-linked mannosylation hydrolase activity tetrapyrrole biosynthesis I (from glutamate) xylan biosynthesis protein N-glycosylation (eukaryotic, high mannose) Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis protein N-linked glycosylation GPI anchor biosynthetic process cellulose synthase (UDP-forming) activity thylakoid membrane N-Glycan biosynthesis unfolded protein binding cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |