TreatCFM001897's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein folding | 0.003894282 | GO:0006457 |
| imidazoleglycerol-phosphate synthase activity | 0.004514311 | GO:0000107 |
| oxo-acid-lyase activity | 0.004514311 | GO:0016833 |
| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.004514311 | GO:0003949 |
| L-glutamine degradation I | 0.004516602 | plantCyc |
| L-histidine biosynthesis | 0.004516602 | plantCyc |
| Transcription_related, Transcription factor: NF-YB | 0.006378735 | TF family |
| ribosome assembly | 0.006771466 | GO:0042255 |
| NOD-like receptor signaling pathway | 0.014614695 | KEGG pathway |
| histidine biosynthetic process | 0.015039922 | GO:0000105 |
| sulfate assimilation | 0.023434558 | GO:0000103 |
| cellular response to oxidative stress | 0.023434558 | GO:0034599 |
| protein peptidyl-prolyl isomerization | 0.025522569 | GO:0000413 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.028168617 | GO:0016671 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.028501468 | ubs family |
| Biosynthesis of amino acids | 0.030350829 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.030350829 | KEGG pathway |
| protein disulfide oxidoreductase activity | 0.036741787 | GO:0015035 |
| peptidyl-prolyl cis-trans isomerase activity | 0.036741787 | GO:0003755 |
| protein heterodimerization activity | 0.041088108 | GO:0046982 |
| cell redox homeostasis | 0.048748898 | GO:0045454 |
| cytoplasm | 0.049298342 | GO:0005737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015343 | - | - |
| CRO_T022344 | AT4G26900 (1.00E-128) | AT-HF|HIS HF |
| CRO_T024939 | AT4G15770 (1.00E-89) | RNA binding |
| CRO_T028124 | - | - |
| CRO_T032426 | AT2G35010 (3.00E-21) | ATO1|thioredoxin O1 |
| CRO_T033319 | AT2G37060 (4.00E-15) | NF-YB8|nuclear factor Y, subunit B8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000038 | Monoterpenoid biosynthesis Ubiquitin_Proteasome_system, E3: U-box Ubiquitin mediated proteolysis peptidyl-prolyl cis-trans isomerase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM000697 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) integral component of plasma membrane ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism imidazoleglycerol-phosphate synthase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity L-glutamine degradation I L-histidine biosynthesis cation-transporting ATPase activity Biosynthesis of amino acids histidine biosynthetic process cation transmembrane transport glucose import proton transport glucose transmembrane transport glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TreatCFM000698 | oxo-acid-lyase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity omega peptidase activity imidazoleglycerol-phosphate synthase activity Ubiquitin_Proteasome_system, DUB: Josephin L-glutamine degradation I L-histidine biosynthesis thiol-dependent ubiquitin-specific protease activity transferase activity, transferring hexosyl groups histidine biosynthetic process protein deubiquitination Biosynthesis of amino acids | details |
| TreatCFM000839 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) imidazoleglycerol-phosphate synthase activity oxo-acid-lyase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity L-glutamine degradation I L-histidine biosynthesis mitochondrial proton-transporting ATP synthase complex assembly histidine biosynthetic process Biosynthesis of amino acids | details |
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |