TreatCFM001909's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000886394 | cazy family |
| cytosol | 0.00338709 | GO:0005829 |
| photorespiration | 0.003718455 | plantCyc |
| transcription corepressor activity | 0.006434743 | GO:0003714 |
| glycerate dehydrogenase activity | 0.006434743 | GO:0008465 |
| UDP-arabinopyranose mutase activity | 0.006434743 | GO:0052691 |
| floral organ morphogenesis | 0.006526497 | GO:0048444 |
| monopolar cell growth | 0.006526497 | GO:0042814 |
| regulation of epidermal cell division | 0.006526497 | GO:0010482 |
| inductive cell-cell signaling | 0.006526497 | GO:0031129 |
| regulation of epidermal cell differentiation | 0.006526497 | GO:0045604 |
| fruit morphogenesis | 0.006526497 | GO:0048530 |
| regulation of trichome morphogenesis | 0.006526497 | GO:2000039 |
| Golgi vesicle prefusion complex stabilization | 0.008459024 | GO:0048213 |
| negative regulation of nucleic acid-templated transcription | 0.008459024 | GO:1903507 |
| UDP-L-arabinose metabolic process | 0.009135071 | GO:0033356 |
| retrograde transport, vesicle recycling within Golgi | 0.009367919 | GO:0000301 |
| trichome branching | 0.009367919 | GO:0010091 |
| plant-type cell wall biogenesis | 0.009367919 | GO:0009832 |
| microtubule cytoskeleton organization | 0.015216121 | GO:0000226 |
| Golgi organization | 0.016055528 | GO:0007030 |
| regulation of cell shape | 0.016055528 | GO:0008360 |
| leaf morphogenesis | 0.016055528 | GO:0009965 |
| retrograde vesicle-mediated transport, Golgi to ER | 0.016055528 | GO:0006890 |
| vesicle docking | 0.016809122 | GO:0048278 |
| Amino sugar and nucleotide sugar metabolism | 0.026405845 | KEGG pathway |
| Endocytosis | 0.026405845 | KEGG pathway |
| cellulose biosynthetic process | 0.028206362 | GO:0030244 |
| exocytosis | 0.028206362 | GO:0006887 |
| Golgi transport complex | 0.041195324 | GO:0017119 |
| NAD binding | 0.042281465 | GO:0051287 |
| protein homodimerization activity | 0.042281465 | GO:0042803 |
| small GTPase mediated signal transduction | 0.046158912 | GO:0007264 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000923 | AT1G01510 (1.00E-145) | AN|ANGUSTIFOLIA; DOQ|DETORQUEO |
| CRO_T005437 | AT5G57460 (0) | unknown protein |
| CRO_T010338 | AT2G31680 (7.00E-98) | AtRABA5d|RAB GTPase homolog A5D |
| CRO_T019711 | AT4G01400 (0) | unknown protein |
| CRO_T029313 | AT5G16510 (1.00E-140) | RGP5|reversibly glycosylated polypeptide 5; RGP5|reversibly glycosylated protein 5 |
| CRO_T030714 | AT3G15000 (1.00E-71) | MORF8|multiple organellar RNA editing factor 8; RIP1|RNA-editing factor interacting protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000109 | C-5 methylation of cytosine cellular response to heat lysyl-tRNA aminoacylation DNA methylation on cytosine within a CHH sequence glutaminyl-tRNAgln biosynthesis via transamidation ajmaline and sarpagine biosynthesis lysine-tRNA ligase activity DNA (cytosine-5-)-methyltransferase activity carbon-nitrogen ligase activity, with glutamine as amido-N-donor small GTPase mediated signal transduction | details |
| TreatCFM000360 | radial pattern formation bundle sheath cell fate specification regulation of cellular metabolic process maintenance of protein location in nucleus asymmetric cell division gravitropism glyoxylate cycle TCA cycle II (plants and fungi) Transcription_related, Transcription factor: GRAS gluconeogenesis I malate metabolic process leaf development tricarboxylic acid cycle L-malate dehydrogenase activity | details |
| TreatCFM000593 | photorespiration regulation of epidermal cell differentiation inductive cell-cell signaling regulation of epidermal cell division regulation of trichome morphogenesis fruit morphogenesis monopolar cell growth floral organ morphogenesis negative regulation of nucleic acid-templated transcription GTP binding glycerate dehydrogenase activity signal recognition particle trichome branching transcription corepressor activity 7S RNA binding SRP-dependent cotranslational protein targeting to membrane microtubule cytoskeleton organization regulation of cell shape leaf morphogenesis glucose transmembrane transport Protein export Endocytosis glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity NAD binding protein homodimerization activity small GTPase mediated signal transduction | details |
| TreatCFM000792 | Transcription_related, Transcription factor: MIKC lysyl-tRNA aminoacylation lysine-tRNA ligase activity | details |
| TreatCFM001073 | PcG protein complex Transcription_related, Transcription factor: MIKC Transcription_related, Transcription regulator: SET glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Lysine degradation potassium ion binding pyruvate kinase activity | details |
| TreatCFM001165 | Carbon metabolism formate-tetrahydrofolate ligase activity folic acid-containing compound biosynthetic process folate polyglutamylation folate transformations II L-valine degradation I tetrahydrofolate biosynthesis II methylmalonate-semialdehyde dehydrogenase (acylating) activity vindoline and vinblastine biosynthesis Endocytosis small GTPase mediated signal transduction oxidation-reduction process membrane | details |
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001528 | fatty acid biosynthesis initiation I peptide-glutamate-N-acetyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity peptide-serine-N-acetyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc double-stranded RNA binding Hedgehog signaling pathway Other types of O-glycan biosynthesis N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation DNA clamp loader activity ribonuclease III activity Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box histone acetyltransferase complex macromolecular complex AP-type membrane coat adaptor complex NatA complex endoplasmic reticulum Transcription_related, Transcription regulator: TRAF endosomal transport karyogamy Golgi vesicle prefusion complex stabilization DNA replication factor C complex retrograde transport, vesicle recycling within Golgi Transcription_related, Transcription regulator: GNAT DNA-dependent DNA replication cellular component organization cytosolic ribosome Golgi transport complex | details |
| TreatCFM001617 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related xylan biosynthetic process plant-type secondary cell wall biogenesis phenylpropanoid biosynthetic process ABC transporters regulation of catalytic activity Endocytosis glucuronosyltransferase activity guiding stereospecific synthesis activity small GTPase mediated signal transduction | details |
| TreatCFM001676 | Endocytosis small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
| TreatCFM001677 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis small GTPase mediated signal transduction | details |
| TreatCFM001718 | AP-type membrane coat adaptor complex voltage-gated chloride channel activity chloride transport meristem development retrograde transport, vesicle recycling within Golgi endosomal transport Golgi vesicle prefusion complex stabilization anatomical structure morphogenesis Endocytosis Golgi transport complex regulation of anion transmembrane transport Golgi organization single-organism developmental process retrograde vesicle-mediated transport, Golgi to ER vesicle docking ion transmembrane transport exocytosis protein serine/threonine phosphatase activity | details |
| TreatCFM001862 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis proton transport glucose import glucose transmembrane transport small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
| TreatCFM001870 | mevalonate pathway I hydroxymethylglutaryl-CoA reductase (NADPH) activity Golgi vesicle prefusion complex stabilization coenzyme A metabolic process retrograde transport, vesicle recycling within Golgi vesicle docking Golgi organization isoprenoid biosynthetic process retrograde vesicle-mediated transport, Golgi to ER Endocytosis Terpenoid backbone biosynthesis exocytosis Golgi transport complex NADP binding small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |