TreatCFM000360's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| radial pattern formation | 0.010258798 | GO:0009956 |
| bundle sheath cell fate specification | 0.010258798 | GO:0090610 |
| regulation of cellular metabolic process | 0.010258798 | GO:0031323 |
| maintenance of protein location in nucleus | 0.010258798 | GO:0051457 |
| asymmetric cell division | 0.010258798 | GO:0008356 |
| gravitropism | 0.011396643 | GO:0009630 |
| glyoxylate cycle | 0.013626281 | plantCyc |
| TCA cycle II (plants and fungi) | 0.013626281 | plantCyc |
| Transcription_related, Transcription factor: GRAS | 0.017454385 | TF family |
| gluconeogenesis I | 0.018881826 | plantCyc |
| malate metabolic process | 0.021959762 | GO:0006108 |
| leaf development | 0.024541353 | GO:0048366 |
| tricarboxylic acid cycle | 0.029381357 | GO:0006099 |
| L-malate dehydrogenase activity | 0.047372255 | GO:0030060 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002055 | AT2G22780 (6.00E-29) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T010338 | AT2G31680 (7.00E-98) | AtRABA5d|RAB GTPase homolog A5D |
| CRO_T017779 | AT4G00350 (7.00E-179) | MATE efflux family protein |
| CRO_T020905 | AT4G08690 (9.00E-19) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T026105 | AT1G66350 (2.00E-59) | RGL1|RGA-like 1 |
| CRO_T029443 | AT4G04890 (1.00E-10) | PDF2|protodermal factor 2 |
| CRO_T030631 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000109 | C-5 methylation of cytosine cellular response to heat lysyl-tRNA aminoacylation DNA methylation on cytosine within a CHH sequence glutaminyl-tRNAgln biosynthesis via transamidation ajmaline and sarpagine biosynthesis lysine-tRNA ligase activity DNA (cytosine-5-)-methyltransferase activity carbon-nitrogen ligase activity, with glutamine as amido-N-donor small GTPase mediated signal transduction | details |
| TreatCFM000593 | photorespiration regulation of epidermal cell differentiation inductive cell-cell signaling regulation of epidermal cell division regulation of trichome morphogenesis fruit morphogenesis monopolar cell growth floral organ morphogenesis negative regulation of nucleic acid-templated transcription GTP binding glycerate dehydrogenase activity signal recognition particle trichome branching transcription corepressor activity 7S RNA binding SRP-dependent cotranslational protein targeting to membrane microtubule cytoskeleton organization regulation of cell shape leaf morphogenesis glucose transmembrane transport Protein export Endocytosis glucose import proton transport glucose transmembrane transporter activity sugar:proton symporter activity NAD binding protein homodimerization activity small GTPase mediated signal transduction | details |
| TreatCFM000792 | Transcription_related, Transcription factor: MIKC lysyl-tRNA aminoacylation lysine-tRNA ligase activity | details |
| TreatCFM001073 | PcG protein complex Transcription_related, Transcription factor: MIKC Transcription_related, Transcription regulator: SET glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Lysine degradation potassium ion binding pyruvate kinase activity | details |
| TreatCFM001165 | Carbon metabolism formate-tetrahydrofolate ligase activity folic acid-containing compound biosynthetic process folate polyglutamylation folate transformations II L-valine degradation I tetrahydrofolate biosynthesis II methylmalonate-semialdehyde dehydrogenase (acylating) activity vindoline and vinblastine biosynthesis Endocytosis small GTPase mediated signal transduction oxidation-reduction process membrane | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001369 | regulation of cellular metabolic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle carbohydrate metabolic process Transcription_related, Transcription factor: C3H glyoxylate cycle TCA cycle II (plants and fungi) malate metabolic process phosphotransferase activity, alcohol group as acceptor L-malate dehydrogenase activity Sec61 translocon complex gluconeogenesis I tricarboxylic acid cycle COP9 signalosome Protein export proteasome complex | details |
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001604 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts virus induced gene silencing response to toxic substance response to absence of light response to far red light response to red light posttranscriptional gene silencing by RNA response to cold nuclear body protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity response to water deprivation response to salt stress | details |
| TreatCFM001617 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related xylan biosynthetic process plant-type secondary cell wall biogenesis phenylpropanoid biosynthetic process ABC transporters regulation of catalytic activity Endocytosis glucuronosyltransferase activity guiding stereospecific synthesis activity small GTPase mediated signal transduction | details |
| TreatCFM001643 | maintenance of protein location in nucleus bundle sheath cell fate specification asymmetric cell division radial pattern formation gravitropism leaf development nucleus Transcription_related, Transcription factor: GRAS | details |
| TreatCFM001676 | Endocytosis small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
| TreatCFM001677 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis small GTPase mediated signal transduction | details |
| TreatCFM001718 | AP-type membrane coat adaptor complex voltage-gated chloride channel activity chloride transport meristem development retrograde transport, vesicle recycling within Golgi endosomal transport Golgi vesicle prefusion complex stabilization anatomical structure morphogenesis Endocytosis Golgi transport complex regulation of anion transmembrane transport Golgi organization single-organism developmental process retrograde vesicle-mediated transport, Golgi to ER vesicle docking ion transmembrane transport exocytosis protein serine/threonine phosphatase activity | details |
| TreatCFM001779 | developmental process involved in reproduction detection of nutrient organ senescence vegetative phase change regulation of cellular metabolic process L-malate dehydrogenase activity protein tyrosine kinase activity glyoxylate cycle TCA cycle II (plants and fungi) sugar mediated signaling pathway Apelin signaling pathway primary root development gluconeogenesis I malate metabolic process tricarboxylic acid cycle zinc ion binding peptidyl-tyrosine phosphorylation abscisic acid-activated signaling pathway | details |
| TreatCFM001862 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis proton transport glucose import glucose transmembrane transport small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
| TreatCFM001870 | mevalonate pathway I hydroxymethylglutaryl-CoA reductase (NADPH) activity Golgi vesicle prefusion complex stabilization coenzyme A metabolic process retrograde transport, vesicle recycling within Golgi vesicle docking Golgi organization isoprenoid biosynthetic process retrograde vesicle-mediated transport, Golgi to ER Endocytosis Terpenoid backbone biosynthesis exocytosis Golgi transport complex NADP binding small GTPase mediated signal transduction | details |
| TreatCFM001909 | formation of glycosidic bonds, GlycosylTransferases: GTnc cytosol photorespiration transcription corepressor activity glycerate dehydrogenase activity UDP-arabinopyranose mutase activity floral organ morphogenesis monopolar cell growth regulation of epidermal cell division inductive cell-cell signaling regulation of epidermal cell differentiation fruit morphogenesis regulation of trichome morphogenesis Golgi vesicle prefusion complex stabilization negative regulation of nucleic acid-templated transcription UDP-L-arabinose metabolic process retrograde transport, vesicle recycling within Golgi trichome branching plant-type cell wall biogenesis microtubule cytoskeleton organization Golgi organization regulation of cell shape leaf morphogenesis retrograde vesicle-mediated transport, Golgi to ER vesicle docking Amino sugar and nucleotide sugar metabolism Endocytosis cellulose biosynthetic process exocytosis Golgi transport complex NAD binding protein homodimerization activity small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |