TreatCFM001939's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: SWI/SNF-BAF60b | 0.002126245 | TF family |
| MAPK signaling pathway - fly | 0.006824224 | KEGG pathway |
| reactive oxygen species degradation | 0.007789323 | plantCyc |
| superoxide radicals degradation | 0.007789323 | plantCyc |
| TCA cycle II (plants and fungi) | 0.007789323 | plantCyc |
| DNA N-glycosylase activity | 0.01128411 | GO:0019104 |
| triphosphatase activity | 0.01128411 | GO:0050355 |
| Base excision repair | 0.011683984 | KEGG pathway |
| metabolic process | 0.012423445 | GO:0008152 |
| base-excision repair | 0.013477937 | GO:0006284 |
| removal of superoxide radicals | 0.013477937 | GO:0019430 |
| root development | 0.018677164 | GO:0048364 |
| superoxide dismutase activity | 0.019547565 | GO:0004784 |
| nucleus | 0.037461816 | GO:0005634 |
| mitochondrial matrix | 0.037461816 | GO:0005759 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004989 | AT4G03150 (2.00E-13) | unknown protein |
| CRO_T018722 | AT3G10920 (3.00E-105) | ATMSD1|ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1; MEE33|MATERNAL EFFECT EMBRYO ARREST 33; MSD1|manganese superoxide dismutase 1 |
| CRO_T020861 | AT2G20420 (0) | ATP citrate lyase (ACL) family protein |
| CRO_T021065 | AT2G04750 (0) | Actin binding Calponin homology (CH) domain-containing protein |
| CRO_T026973 | AT2G11890 (4.00E-35) | TTM3|Triphosphate Tunnel Metalloenzyme 3 |
| CRO_T031529 | AT1G75230 (4.00E-91) | DNA glycosylase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001980 | TCA cycle II (plants and fungi) negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway red or far-red light signaling pathway MAPK signaling pathway tetrapyrrole binding Transcription_related, Transcription factor: RWP-RK vesicle docking Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C3H vesicle fusion nuclear envelope integral component of endoplasmic reticulum membrane SNARE complex | details |
| TreatCFM002008 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: TUB Transcription_related, Transcription regulator: SWI/SNF-BAF60b cilium mitochondrial inner membrane peptidase complex removal of superoxide radicals thylakoid membrane organization mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion signal peptide processing protein localization to cilium Protein export phosphatidylinositol binding superoxide dismutase activity mitochondrial matrix serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |