TreatCFM002008's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway - fly | 0.003722304 | KEGG pathway |
| reactive oxygen species degradation | 0.004251233 | plantCyc |
| superoxide radicals degradation | 0.004251233 | plantCyc |
| Transcription_related, Transcription factor: TUB | 0.005847174 | TF family |
| Transcription_related, Transcription regulator: SWI/SNF-BAF60b | 0.005847174 | TF family |
| cilium | 0.006645989 | GO:0005929 |
| mitochondrial inner membrane peptidase complex | 0.006645989 | GO:0042720 |
| removal of superoxide radicals | 0.008038082 | GO:0019430 |
| thylakoid membrane organization | 0.008038082 | GO:0010027 |
| mitochondrial respiratory chain complex assembly | 0.008038082 | GO:0033108 |
| protein processing involved in protein targeting to mitochondrion | 0.008038082 | GO:0006627 |
| signal peptide processing | 0.008038082 | GO:0006465 |
| protein localization to cilium | 0.008038082 | GO:0061512 |
| Protein export | 0.012723584 | KEGG pathway |
| phosphatidylinositol binding | 0.016230153 | GO:0035091 |
| superoxide dismutase activity | 0.016230153 | GO:0004784 |
| mitochondrial matrix | 0.019157014 | GO:0005759 |
| serine-type endopeptidase activity | 0.046957595 | GO:0004252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012459 | AT3G13410 (3.00E-65) | unknown protein |
| CRO_T014086 | AT1G53320 (7.00E-145) | AtTLP7|tubby like protein 7 |
| CRO_T016942 | AT1G01730 (4.00E-30) | unknown protein |
| CRO_T018722 | AT3G10920 (3.00E-105) | ATMSD1|ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1; MEE33|MATERNAL EFFECT EMBRYO ARREST 33; MSD1|manganese superoxide dismutase 1 |
| CRO_T019476 | AT1G47310 (1.00E-65) | unknown protein |
| CRO_T021065 | AT2G04750 (0) | Actin binding Calponin homology (CH) domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000370 | serine-type exopeptidase activity tRNA (guanine) methyltransferase activity RNA biosynthetic process tRNA methylation nuclease activity nucleic acid phosphodiester bond hydrolysis DNA-directed RNA polymerase activity | details |
| TreatCFM001398 | Transcription_related, Transcription factor: C2C2-LSD mitochondrial inner membrane peptidase complex geranyl acetate biosynthesis protein processing involved in protein targeting to mitochondrion negative regulation of plant-type hypersensitive response regulation of cell differentiation mitochondrial respiratory chain complex assembly plant-type hypersensitive response thylakoid membrane organization signal peptide processing Protein export ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) cell differentiation nucleic acid phosphodiester bond hydrolysis endonuclease activity | details |
| TreatCFM001479 | magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity regulation of actin filament polymerization response to very low light intensity stimulus alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding vegetative to reproductive phase transition of meristem actin cytoskeleton integral component of membrane viral nucleocapsid intracellular ribonucleoprotein complex Endocytosis | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM001939 | Transcription_related, Transcription regulator: SWI/SNF-BAF60b MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation TCA cycle II (plants and fungi) DNA N-glycosylase activity triphosphatase activity Base excision repair metabolic process base-excision repair removal of superoxide radicals root development superoxide dismutase activity nucleus mitochondrial matrix | details |
| TreatCFM002002 | adenosine ribonucleotides de novo biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc vacuolar proton-transporting V-type ATPase, V1 domain protein glycosylation ATP hydrolysis coupled proton transport small GTPase mediated signal transduction proton-transporting ATPase activity, rotational mechanism galactosyltransferase activity cell part | details |
Expression profiles
 Show details about module gene expression profiling |