TreatCFM001954's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: DDT | 0.001240768 | TF family |
| pyrimidine ribonucleosides salvage I | 0.002126245 | plantCyc |
| L-arginine import | 0.005764329 | GO:0043091 |
| UMP biosynthetic process | 0.005764329 | GO:0006222 |
| L-lysine transmembrane transport | 0.005764329 | GO:1903401 |
| defense response, incompatible interaction | 0.005764329 | GO:0009814 |
| reactive oxygen species metabolic process | 0.005764329 | GO:0072593 |
| L-glutamate import | 0.005764329 | GO:0051938 |
| L-glutamate transmembrane transport | 0.005764329 | GO:0089711 |
| L-glutamate transmembrane transporter activity | 0.005782675 | GO:0005313 |
| pyrophosphatase activity | 0.005782675 | GO:0016462 |
| L-lysine transmembrane transporter activity | 0.006424245 | GO:0015189 |
| pyrimidine nucleoside salvage | 0.00706026 | GO:0043097 |
| pyrimidine nucleobase metabolic process | 0.007171798 | GO:0006206 |
| uridine kinase activity | 0.008670167 | GO:0004849 |
| outer membrane | 0.012142698 | GO:0019867 |
| response to heat | 0.022557804 | GO:0009408 |
| auxin polar transport | 0.024160149 | GO:0009926 |
| cytosol | 0.024811185 | GO:0005829 |
| protein disulfide oxidoreductase activity | 0.037651957 | GO:0015035 |
| antiporter activity | 0.041572895 | GO:0015297 |
| electron carrier activity | 0.049791758 | GO:0009055 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000382 | AT4G12750 (0) | Homeodomain-like transcriptional regulator |
| CRO_T004594 | AT3G42630 (2.00E-110) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T007514 | AT5G05520 (2.00E-177) | Outer membrane OMP85 family protein |
| CRO_T014127 | AT1G11530 (2.00E-10) | ATCXXS1|C-terminal cysteine residue is changed to a serine 1 |
| CRO_T018727 | AT2G01460 (2.00E-45) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T025341 | AT1G17120 (0) | CAT8|cationic amino acid transporter 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000169 | L-glutamate import L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport L-lysine transmembrane transporter activity L-glutamate transmembrane transporter activity antiporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001391 | Cytochrome_P450, Cytochrome P450: CYP720A MAPK signaling pathway enzyme-directed rRNA pseudouridine synthesis negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway cotyledon vascular tissue pattern formation red or far-red light signaling pathway mitochondrial RNA metabolic process chloroplast RNA modification reactive oxygen species metabolic process cation transport leaf vascular tissue pattern formation alkaloid metabolic process RNA modification phloem or xylem histogenesis | details |
| TreatCFM002105 | outer membrane enzyme-directed rRNA pseudouridine synthesis pseudouridine synthase activity deaminase activity Transcription_related, Transcription factor: ERF | details |
Expression profiles
 Show details about module gene expression profiling |