TreatCFM002105's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| outer membrane | 0.003190782 | GO:0019867 |
| enzyme-directed rRNA pseudouridine synthesis | 0.003900421 | GO:0000455 |
| pseudouridine synthase activity | 0.015168282 | GO:0009982 |
| deaminase activity | 0.015168282 | GO:0019239 |
| Transcription_related, Transcription factor: ERF | 0.016554997 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001127 | AT4G21770 (6.00E-174) | Pseudouridine synthase family protein |
| CRO_T007514 | AT5G05520 (2.00E-177) | Outer membrane OMP85 family protein |
| CRO_T009313 | AT4G25490 (5.00E-24) | CBF1|C-repeat/DRE binding factor 1; DREB1B|DRE BINDING PROTEIN 1B |
| CRO_T018823 | AT1G62510 (4.00E-21) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T030106 | AT3G32940 (7.00E-59) | RNA-binding KH domain-containing protein |
| CRO_T032707 | AT3G10150 (5.00E-136) | PAP16|purple acid phosphatase 16 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001025 | oxidation-reduction process acetaldehyde biosynthesis I pyruvate fermentation to ethanol II oxidoreductase activity Phenylpropanoid biosynthesis zinc ion binding salicylate glucosides biosynthesis II farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II detoxification of reactive carbonyls in chloroplasts quercetin glucoside biosynthesis (Allium) traumatin and (Z)-3-hexen-1-yl acetate biosynthesis quercetin gentiotetraside biosynthesis UDP-glucosyltransferase activity | details |
| TreatCFM001391 | Cytochrome_P450, Cytochrome P450: CYP720A MAPK signaling pathway enzyme-directed rRNA pseudouridine synthesis negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway cotyledon vascular tissue pattern formation red or far-red light signaling pathway mitochondrial RNA metabolic process chloroplast RNA modification reactive oxygen species metabolic process cation transport leaf vascular tissue pattern formation alkaloid metabolic process RNA modification phloem or xylem histogenesis | details |
| TreatCFM001508 | triose-phosphate isomerase activity oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor glycerol catabolic process enzyme-directed rRNA pseudouridine synthesis glyceraldehyde-3-phosphate biosynthetic process deaminase activity pseudouridine synthase activity solute:proton antiporter activity cation transport gluconeogenesis pentose-phosphate shunt Calvin-Benson-Bassham cycle gluconeogenesis I glucose and glucose-1-phosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) quinone binding glycolytic process Carbon metabolism | details |
| TreatCFM001743 | peptide alpha-N-acetyltransferase activity N-terminal protein amino acid acetylation Transcription_related, Transcription regulator: GNAT phosphatidate metabolism, as a signaling molecule Glycerolipid metabolism chloroplast inner membrane protein acetyltransferase complex | details |
| TreatCFM001893 | Cytochrome_P450, Cytochrome P450: CYP721A brassinosteroids inactivation Proteasome proteasome assembly polyubiquitin binding proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: MYB small GTPase mediated signal transduction proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001954 | Transcription_related, Transcription regulator: DDT pyrimidine ribonucleosides salvage I L-arginine import UMP biosynthetic process L-lysine transmembrane transport defense response, incompatible interaction reactive oxygen species metabolic process L-glutamate import L-glutamate transmembrane transport L-glutamate transmembrane transporter activity pyrophosphatase activity L-lysine transmembrane transporter activity pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process uridine kinase activity outer membrane response to heat auxin polar transport cytosol protein disulfide oxidoreductase activity antiporter activity electron carrier activity | details |
| TreatCFM002167 | Cytochrome_P450, Cytochrome P450: CYP721A glucose and glucose-1-phosphate degradation brassinosteroids inactivation Proteasome polyubiquitin binding oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor proteasome assembly Transcription_related, Transcription factor: ERF proteasome regulatory particle, base subcomplex | details |
Expression profiles
 Show details about module gene expression profiling |