TreatCFM001981's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphate acquisition | 0.005131975 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.008757163 | kinase family |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.008757163 | cazy family |
| maintenance of root meristem identity | 0.009654255 | GO:0010078 |
| COPII vesicle coat | 0.031255803 | GO:0030127 |
| Protein processing in endoplasmic reticulum | 0.037871877 | KEGG pathway |
| L-ascorbate oxidase activity | 0.04061079 | GO:0008447 |
| oxidoreductase activity, oxidizing metal ions | 0.047263877 | GO:0016722 |
| acid phosphatase activity | 0.047263877 | GO:0003993 |
| actin binding | 0.047263877 | GO:0003779 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T017830 | AT1G11180 (9.00E-91) | SCAMP2|Secretory carrier membrane protein 2 |
| CRO_T018324 | AT1G21850 (0) | sks8|SKU5 similar 8 |
| CRO_T024974 | AT3G22790 (0) | NET1A|Networked 1A |
| CRO_T027860 | AT3G20500 (9.00E-72) | ATPAP18|PURPLE ACID PHOSPHATASE 18 |
| CRO_T029733 | AT1G05520 (0) | Sec23/Sec24 protein transport family protein |
| CRO_T032063 | AT1G66750 (1.00E-20) | CAK4|CDK-activating kinase 4; CDKD1; 2|CYCLIN-DEPENDENT KINASE D1; 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001162 | Transcription_related, Transcription factor: MYB-related translational initiation RNA secondary structure unwinding regulation of gene expression RNA transport | details |
| TreatCFM001754 | glycerol-3-phosphate O-acyltransferase activity methionine adenosyltransferase activity GDP-mannose transmembrane transporter activity maintenance of root meristem identity GDP-mannose transmembrane transport S-adenosylmethionine biosynthetic process endoplasmic reticulum DNA replication factor A complex CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family one-carbon metabolic process Prp19 complex Cul4-RING E3 ubiquitin ligase complex carbohydrate transport precatalytic spliceosome membrane part catalytic step 2 spliceosome cytosol mRNA splicing, via spliceosome | details |
| TreatCFM002062 | Transcription_related, Transcription factor: BBR-BPC | details |
Expression profiles
 Show details about module gene expression profiling |