TreatCFM001991's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleotide-excision repair factor 1 complex | 0.005140079 | GO:0000110 |
| cytosol | 0.005140079 | GO:0005829 |
| single-stranded DNA endodeoxyribonuclease activity | 0.006393058 | GO:0000014 |
| UTP:xylose-1-phosphate uridylyltransferase activity | 0.006393058 | GO:0047338 |
| UTP:arabinose-1-phosphate uridylyltransferase activity | 0.006393058 | GO:0010491 |
| UTP:galactose-1-phosphate uridylyltransferase activity | 0.006393058 | GO:0017103 |
| glucuronate-1-phosphate uridylyltransferase activity | 0.006393058 | GO:0047350 |
| leucine-tRNA ligase activity | 0.006393058 | GO:0004823 |
| nucleotide-excision repair, DNA incision, 5'-to lesion | 0.007305596 | GO:0006296 |
| UTP:glucose-1-phosphate uridylyltransferase activity | 0.007305596 | GO:0003983 |
| nucleotide-sugar biosynthetic process | 0.007305596 | GO:0009226 |
| UDP-glucose metabolic process | 0.007305596 | GO:0006011 |
| UDP-D-galactose metabolic process | 0.007305596 | GO:0052573 |
| nucleotide-excision repair involved in interstrand cross-link repair | 0.007305596 | GO:1901255 |
| leucyl-tRNA aminoacylation | 0.007305596 | GO:0006429 |
| UDP-glucuronate metabolic process | 0.007305596 | GO:0046398 |
| UDP-L-arabinose metabolic process | 0.008521432 | GO:0033356 |
| resolution of meiotic recombination intermediates | 0.008521432 | GO:0000712 |
| D-galactose degradation III | 0.010269531 | plantCyc |
| UDP-α-D-glucuronate biosynthesis (from myo-inositol) | 0.010269531 | plantCyc |
| UDP-N-acetyl-D-glucosamine biosynthesis II | 0.010269531 | plantCyc |
| UDP-D-galacturonate biosynthesis II (from D-galacturonate) | 0.010269531 | plantCyc |
| UDP-glucose biosynthesis | 0.010269531 | plantCyc |
| UDP-L-arabinose biosynthesis II (from L-arabinose) | 0.010269531 | plantCyc |
| Transcription_related, Transcription regulator: Jumonji | 0.01274466 | TF family |
| double-strand break repair via homologous recombination | 0.013935511 | GO:0000724 |
| regulation of translational fidelity | 0.013935511 | GO:0006450 |
| stachyose degradation | 0.016024583 | plantCyc |
| sucrose biosynthesis II | 0.016024583 | plantCyc |
| aminoacyl-tRNA editing activity | 0.017566367 | GO:0002161 |
| Nucleotide excision repair | 0.021578089 | KEGG pathway |
| ADP binding | 0.022700328 | GO:0043531 |
| pollen tube | 0.023957282 | GO:0090406 |
| damaged DNA binding | 0.027836454 | GO:0003684 |
| single-stranded DNA binding | 0.027836454 | GO:0003697 |
| Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | 0.032321515 | ubs family |
| isomerase activity | 0.038227661 | GO:0016853 |
| pollen development | 0.043514558 | GO:0009555 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010570 | AT5G41150 (0) | UVH1|ULTRAVIOLET HYPERSENSITIVE 1 |
| CRO_T013006 | AT1G11950 (0) | Transcription factor jumonji (jmjC) domain-containing protein |
| CRO_T015246 | AT3G14470 (1.00E-179) | NB-ARC domain-containing disease resistance protein |
| CRO_T021975 | AT5G23535 (5.00E-74) | KOW domain-containing protein |
| CRO_T022249 | AT5G52560 (1.00E-42) | ATUSP|UDP-sugar pyrophosphorylase |
| CRO_T026559 | - | - |
| CRO_T028987 | AT4G37190 (3.00E-167) | LOCATED IN: cytosol, plasma membrane |
| CRO_T032894 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000088 | details | |
| TreatCFM000292 | hydrolase activity, hydrolyzing O-glycosyl compounds leucine-tRNA ligase activity secologanin and strictosidine biosynthesis leucyl-tRNA aminoacylation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: Jumonji aminoacyl-tRNA editing activity protein kinase binding regulation of cyclin-dependent protein serine/threonine kinase activity regulation of translational fidelity Amino sugar and nucleotide sugar metabolism Aminoacyl-tRNA biosynthesis xyloglucan:xyloglucosyl transferase activity cell wall biogenesis xyloglucan metabolic process | details |
| TreatCFM000321 | Zeatin biosynthesis | details |
| TreatCFM000966 | Transcription_related, Transcription regulator: Jumonji leucyl-tRNA aminoacylation inorganic cation transmembrane transport response to chemical hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc leucine-tRNA ligase activity glyoxylate cycle TCA cycle II (plants and fungi) gluconeogenesis I homogalacturonan degradation L-malate dehydrogenase activity aminoacyl-tRNA editing activity regulation of translational fidelity calcium-dependent phospholipid binding malate metabolic process hydrolase activity, acting on glycosyl bonds Aminoacyl-tRNA biosynthesis transition metal ion binding single-organism process tricarboxylic acid cycle metal ion transport intracellular organelle part cell periphery | details |
| TreatCFM001539 | Protein_kinases_phosphatases, PPC:4.3.1: Unknown Function Kinase CAF-1 complex leucyl-tRNA aminoacylation tissue development leucine-tRNA ligase activity ATP binding aminoacyl-tRNA editing activity histone binding regulation of translational fidelity Aminoacyl-tRNA biosynthesis Cell cycle Transcription_related, Transcription regulator: Jumonji DNA recombination nucleosome assembly Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 multicellular organism development embryo development ending in seed dormancy | details |
| TreatCFM001777 | Betalain biosynthesis intralumenal vesicle formation protein import into chloroplast stroma cellular aromatic compound metabolic process choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases oxidoreductase activity, acting on single donors with incorporation of molecular oxygen UDP-glycosyltransferase activity | details |
| TreatCFM001979 | leucyl-tRNA aminoacylation regulation of translational fidelity leucine-tRNA ligase activity lactoylglutathione lyase activity aminoacyl-tRNA editing activity Pyruvate metabolism Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 Aminoacyl-tRNA biosynthesis embryo development ending in seed dormancy | details |
| TreatCFM001992 | respiratory chain complex II nucleotide-excision repair factor 1 complex embryo development ending in seed dormancy nucleotide-excision repair, DNA incision, 5'-to lesion nucleotide-excision repair involved in interstrand cross-link repair Nucleotide excision repair tRNA wobble uridine modification resolution of meiotic recombination intermediates fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate double-strand break repair via homologous recombination single-stranded DNA endodeoxyribonuclease activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) 6-phosphofructokinase activity oxidoreductase activity Glycolysis / Gluconeogenesis carbohydrate phosphorylation single-stranded DNA binding damaged DNA binding response to cytokinin isomerase activity FMN binding formation of glycosidic bonds, GlycosylTransferases: GTnc Photosynthesis | details |
| TreatCFM002142 | leucine-tRNA ligase activity leucyl-tRNA aminoacylation CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain regulation of translational fidelity vacuolar transport DNA-directed RNA polymerase II, holoenzyme aminoacyl-tRNA editing activity threonine-type endopeptidase activity Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD proteasome core complex cytosolic ribosome Aminoacyl-tRNA biosynthesis Proteasome Endocytosis proteolysis involved in cellular protein catabolic process embryo development ending in seed dormancy | details |
| TreatCFM002153 | dephosphorylation of RNA polymerase II C-terminal domain leucyl-tRNA aminoacylation CTD phosphatase activity leucine-tRNA ligase activity DNA-directed RNA polymerase II, holoenzyme aminoacyl-tRNA editing activity regulation of translational fidelity Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD Aminoacyl-tRNA biosynthesis ER to Golgi vesicle-mediated transport embryo development ending in seed dormancy | details |
Expression profiles
 Show details about module gene expression profiling |