TreatCFM002007's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Alfin-like | 0.004386353 | TF family |
| Transcription_related, Transcription factor: zf-HD | 0.004386353 | TF family |
| Transcription_related, Transcription factor: TCP | 0.009084858 | TF family |
| deoxyribonucleoside diphosphate metabolic process | 0.00955109 | GO:0009186 |
| deoxyribonucleotide biosynthetic process | 0.00955109 | GO:0009263 |
| regulation of cell cycle | 0.00955109 | GO:0051726 |
| peptidyl-histidine phosphorylation | 0.011065675 | GO:0018106 |
| protein histidine kinase activity | 0.013025176 | GO:0004673 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.013025176 | GO:0004748 |
| ribonucleoside-diphosphate reductase complex | 0.013291978 | GO:0005971 |
| Purine metabolism | 0.026655368 | KEGG pathway |
| multicellular organism development | 0.028560275 | GO:0007275 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000069 | AT3G23580 (4.00E-165) | RNR2A|ribonucleotide reductase 2A |
| CRO_T001020 | AT1G78915 (7.00E-18) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T002687 | AT2G02470 (3.00E-60) | AL6|alfin-like 6 |
| CRO_T019530 | AT3G45150 (2.00E-16) | TCP16|TCP domain protein 16 |
| CRO_T024094 | AT4G13600 (8.00E-19) | Carbohydrate-binding X8 domain superfamily protein |
| CRO_T026095 | AT1G69600 (8.00E-40) | ATHB29|HOMEOBOX PROTEIN 29; ZFHD1|zinc finger homeodomain 1; ZHD11|ZINC FINGER HOMEODOMAIN 11 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001908 | Transcription_related, Transcription factor: WRKY nuclear cap binding complex Transcription_related, Transcription factor: Alfin-like mRNA cis splicing, via spliceosome RNA cap binding Transcription_related, Transcription factor: Orphans Spliceosome | details |
| TreatCFM001990 | simple leaf morphogenesis CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis regulation of auxin mediated signaling pathway leaf vascular tissue pattern formation cutin biosynthetic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process peptidyl-histidine phosphorylation protein histidine kinase activity glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity Glycerolipid metabolism SCF ubiquitin ligase complex Transcription_related, Transcription factor: C2H2 polysaccharide binding | details |
| TreatCFM002044 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor threonine-type endopeptidase activity deoxyribonucleotide biosynthetic process regulation of cell cycle deoxyribonucleoside diphosphate metabolic process proteasome core complex ribonucleoside-diphosphate reductase complex Proteasome Purine metabolism multicellular organism development proteolysis involved in cellular protein catabolic process embryo development ending in seed dormancy | details |
| TreatCFM002109 | 3'-tRNA processing endoribonuclease activity tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleoside diphosphate metabolic process RNA splicing, via transesterification reactions proteasome regulatory particle, lid subcomplex proteasome assembly deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex structural molecule activity regulation of flower development Transcription_related, Transcription factor: MYB multicellular organism development ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
| TreatCFM002157 | 3'-tRNA processing endoribonuclease activity ribonucleoside-diphosphate reductase complex deoxyribonucleoside diphosphate metabolic process tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis multicellular organism development Purine metabolism RNA transport formation of glycosidic bonds, GlycosylTransferases: GTnc oxidation-reduction process | details |
| TreatCFM002170 | Proteasome L-alanine biosynthesis III molybdenum cofactor biosynthesis sulfurtransferase activity cytosolic proteasome complex nuclear proteasome complex proteasome core complex ribonucleoside-diphosphate reductase complex tRNA wobble position uridine thiolation positive regulation of RNA polymerase II transcriptional preinitiation complex assembly deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process regulation of cell cycle positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor proteasome-activating ATPase activity TBP-class protein binding threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD multicellular organism development peptidase activity proteolysis involved in cellular protein catabolic process Purine metabolism RNA transport | details |
| TreatCFM002171 | protein N-glycosylation (eukaryotic, high mannose) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor regulation of cell cycle deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process pollen tube development embryo sac development cysteine-type endopeptidase activity protein serine/threonine phosphatase activity Purine metabolism ribonucleoside-diphosphate reductase complex rRNA binding extracellular space Lysosome pollen development formation of glycosidic bonds, GlycosylTransferases: GTnc multicellular organism development proteolysis involved in cellular protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |