TreatCFM002170's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Proteasome | 0.000155256 | KEGG pathway |
| L-alanine biosynthesis III | 0.003722304 | plantCyc |
| molybdenum cofactor biosynthesis | 0.004781931 | plantCyc |
| sulfurtransferase activity | 0.007710803 | GO:0016783 |
| cytosolic proteasome complex | 0.010595305 | GO:0031597 |
| nuclear proteasome complex | 0.010595305 | GO:0031595 |
| proteasome core complex | 0.010595305 | GO:0005839 |
| ribonucleoside-diphosphate reductase complex | 0.010595305 | GO:0005971 |
| tRNA wobble position uridine thiolation | 0.010791643 | GO:0002143 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 0.010791643 | GO:0045899 |
| deoxyribonucleoside diphosphate metabolic process | 0.010791643 | GO:0009186 |
| deoxyribonucleotide biosynthetic process | 0.010791643 | GO:0009263 |
| regulation of cell cycle | 0.010791643 | GO:0051726 |
| positive regulation of proteasomal protein catabolic process | 0.010791643 | GO:1901800 |
| proteasome regulatory particle, base subcomplex | 0.011555099 | GO:0008540 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.012519874 | GO:0004748 |
| proteasome-activating ATPase activity | 0.012519874 | GO:0036402 |
| TBP-class protein binding | 0.012519874 | GO:0017025 |
| threonine-type endopeptidase activity | 0.014632134 | GO:0004298 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.015967797 | GO:0030433 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| multicellular organism development | 0.040337322 | GO:0007275 |
| peptidase activity | 0.040936336 | GO:0008233 |
| proteolysis involved in cellular protein catabolic process | 0.041694914 | GO:0051603 |
| Purine metabolism | 0.049186045 | KEGG pathway |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000069 | AT3G23580 (4.00E-165) | RNR2A|ribonucleotide reductase 2A |
| CRO_T007328 | AT2G45700 (1.00E-07) | sterile alpha motif (SAM) domain-containing protein |
| CRO_T018756 | AT5G19990 (0) | RPT6A|regulatory particle triple-A ATPase 6A |
| CRO_T018757 | - | - |
| CRO_T022914 | AT1G51310 (3.00E-178) | transferases; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases |
| CRO_T028507 | AT4G31300 (8.00E-20) | PBA1|N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000497 | DNA 5'-adenosine monophosphate hydrolase activity Ubiquitin_Proteasome_system, E3: RING RNA transport nucleic acid phosphodiester bond hydrolysis DNA repair protein ubiquitination | details |
| TreatCFM001231 | Influenza A Transcription_related, Transcription factor: RWP-RK tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis zinc II ion transmembrane transport zinc ion transmembrane transporter activity methyltransferase activity | details |
| TreatCFM001408 | sulfate activation for sulfonation hydrogen sulfide biosynthetic process male gamete generation adenylylsulfate kinase activity Sulfur metabolism sulfate assimilation Plant-pathogen interaction | details |
| TreatCFM001725 | Influenza A tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis small GTPase mediated signal transduction methyltransferase activity | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002007 | Transcription_related, Transcription factor: Alfin-like Transcription_related, Transcription factor: zf-HD Transcription_related, Transcription factor: TCP deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process regulation of cell cycle peptidyl-histidine phosphorylation protein histidine kinase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex Purine metabolism multicellular organism development | details |
| TreatCFM002044 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor threonine-type endopeptidase activity deoxyribonucleotide biosynthetic process regulation of cell cycle deoxyribonucleoside diphosphate metabolic process proteasome core complex ribonucleoside-diphosphate reductase complex Proteasome Purine metabolism multicellular organism development proteolysis involved in cellular protein catabolic process embryo development ending in seed dormancy | details |
| TreatCFM002109 | 3'-tRNA processing endoribonuclease activity tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleoside diphosphate metabolic process RNA splicing, via transesterification reactions proteasome regulatory particle, lid subcomplex proteasome assembly deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex structural molecule activity regulation of flower development Transcription_related, Transcription factor: MYB multicellular organism development ubiquitin-dependent protein catabolic process Proteasome Purine metabolism RNA transport | details |
| TreatCFM002157 | 3'-tRNA processing endoribonuclease activity ribonucleoside-diphosphate reductase complex deoxyribonucleoside diphosphate metabolic process tRNA 3'-trailer cleavage, endonucleolytic deoxyribonucleotide biosynthetic process regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis multicellular organism development Purine metabolism RNA transport formation of glycosidic bonds, GlycosylTransferases: GTnc oxidation-reduction process | details |
| TreatCFM002166 | mRNA pseudouridine synthesis tRNA wobble position uridine thiolation positive regulation of transcription from RNA polymerase I promoter t-UTP complex formation of glycosidic bonds, GlycosylTransferases: GTnc 90S preribosome sulfurtransferase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis starch biosynthesis starch binding glycogen (starch) synthase activity pseudouridine synthase activity snoRNA binding Transcription_related, Transcription factor: C3H Ribosome biogenesis in eukaryotes tRNA modification maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome | details |
| TreatCFM002171 | protein N-glycosylation (eukaryotic, high mannose) ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor regulation of cell cycle deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process pollen tube development embryo sac development cysteine-type endopeptidase activity protein serine/threonine phosphatase activity Purine metabolism ribonucleoside-diphosphate reductase complex rRNA binding extracellular space Lysosome pollen development formation of glycosidic bonds, GlycosylTransferases: GTnc multicellular organism development proteolysis involved in cellular protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |