TreatCFM002025's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA packaging | 0.002891337 | GO:0006323 |
| microtubule severing | 0.002891337 | GO:0051013 |
| sulfide oxidation, using siroheme sulfite reductase | 0.002891337 | GO:0019424 |
| sulfate reduction | 0.002891337 | GO:0019419 |
| Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) | 0.003722304 | kinase family |
| regulation of DNA replication | 0.005395568 | GO:0006275 |
| sulfite reductase activity | 0.007330637 | GO:0016002 |
| sulfite reductase (ferredoxin) activity | 0.007330637 | GO:0050311 |
| guanosine nucleotides degradation I | 0.008089153 | plantCyc |
| guanosine nucleotides degradation II | 0.008089153 | plantCyc |
| pyrimidine salvage pathway | 0.008089153 | plantCyc |
| sulfate reduction II (assimilatory) | 0.008089153 | plantCyc |
| adenosine nucleotides degradation I | 0.011314777 | plantCyc |
| 5'-nucleotidase activity | 0.01221502 | GO:0008253 |
| negative regulation of transcription, DNA-templated | 0.012834257 | GO:0045892 |
| Sulfur metabolism | 0.016560873 | KEGG pathway |
| NF-kappa B signaling pathway | 0.022357933 | KEGG pathway |
| chloroplast nucleoid | 0.02697784 | GO:0042644 |
| stromule | 0.028887748 | GO:0010319 |
| microtubule-severing ATPase activity | 0.040258966 | GO:0008568 |
| dephosphorylation | 0.045441303 | GO:0016311 |
| Purine metabolism | 0.048868175 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010997 | AT1G80350 (2.00E-165) | BOT1|BOTERO 1; ERH3|ECTOPIC ROOT HAIR 3; FRA2|FRAGILE FIBER 2; FRC2|FURCA2; FTR|FAT ROOT; KTN1|KATANIN 1 |
| CRO_T019909 | AT5G04590 (0) | SIR|sulfite reductase |
| CRO_T028315 | AT5G38210 (4.00E-149) | Protein kinase family protein |
| CRO_T028316 | AT1G66940 (7.00E-20) | protein kinase-related |
| CRO_T029664 | AT2G38680 (1.00E-118) | 5'-nucleotidases; magnesium ion binding |
| CRO_T033610 | AT5G17910 (1.00E-106) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001198 | sulfate reduction II (assimilatory) sulfide oxidation, using siroheme sulfite reductase regulation of meristem structural organization DNA packaging sulfate reduction sulfite reductase activity sulfite reductase (ferredoxin) activity regulation of DNA replication carpel development Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) Sulfur metabolism NF-kappa B signaling pathway negative regulation of transcription, DNA-templated chloroplast nucleoid stromule Transcription_related, Transcription factor: HB | details |
| TreatCFM001677 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis small GTPase mediated signal transduction | details |
| TreatCFM001862 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) NF-kappa B signaling pathway Endocytosis proton transport glucose import glucose transmembrane transport small GTPase mediated signal transduction secondary metabolite biosynthetic process | details |
| TreatCFM002026 | carpel development regulation of meristem structural organization magnesium ion transport magnesium ion transmembrane transport Transcription_related, Transcription factor: HB magnesium ion transmembrane transporter activity lyase activity | details |
| TreatCFM002084 | xylem development determination of bilateral symmetry radial pattern formation meristem initiation polarity specification of adaxial/abaxial axis guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway xylem and phloem pattern formation U6 snRNP Lsm1-7-Pat1 complex adenosine nucleotides degradation I Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX cell differentiation 5'-nucleotidase activity U4/U6 x U5 tri-snRNP complex precatalytic spliceosome cytoplasmic mRNA processing body cytosol catalytic step 2 spliceosome viral nucleocapsid transcription regulatory region DNA binding mRNA splicing, via spliceosome Transcription_related, Transcription factor: HB response to stress Proteasome lipid binding dephosphorylation | details |
| TreatCFM002111 | sulfate reduction II (assimilatory) Sulfur metabolism sulfate reduction sulfide oxidation, using siroheme sulfite reductase DNA packaging sulfite reductase activity sulfite reductase (ferredoxin) activity regulation of DNA replication base-excision repair recognition of pollen negative regulation of transcription, DNA-templated Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: Trihelix chloroplast nucleoid stromule DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |