TreatCFM002111's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sulfate reduction II (assimilatory) | 0.000709167 | plantCyc |
| Sulfur metabolism | 0.003011068 | KEGG pathway |
| sulfate reduction | 0.003855116 | GO:0019419 |
| sulfide oxidation, using siroheme sulfite reductase | 0.003855116 | GO:0019424 |
| DNA packaging | 0.003855116 | GO:0006323 |
| sulfite reductase activity | 0.005890267 | GO:0016002 |
| sulfite reductase (ferredoxin) activity | 0.005890267 | GO:0050311 |
| regulation of DNA replication | 0.00674446 | GO:0006275 |
| base-excision repair | 0.011000791 | GO:0006284 |
| recognition of pollen | 0.011000791 | GO:0048544 |
| negative regulation of transcription, DNA-templated | 0.011000791 | GO:0045892 |
| Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | 0.0194503 | kinase family |
| Transcription_related, Transcription factor: Trihelix | 0.0194503 | TF family |
| chloroplast nucleoid | 0.041216637 | GO:0042644 |
| stromule | 0.044134586 | GO:0010319 |
| DNA binding | 0.045143746 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004757 | AT2G19130 (3.00E-92) | S-locus lectin protein kinase family protein |
| CRO_T014977 | AT4G12650 (0) | Endomembrane protein 70 protein family |
| CRO_T016932 | AT3G10910 (6.00E-33) | DAFL1|DAF-Like gene 1 |
| CRO_T019909 | AT5G04590 (0) | SIR|sulfite reductase |
| CRO_T029729 | AT5G28300 (3.00E-20) | GT2L|GT-2Like protein |
| CRO_T032198 | AT1G58410 (1.00E-36) | Disease resistance protein (CC-NBS-LRR class) family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000651 | N-Glycan biosynthesis fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation carboxypeptidase activity dolichyl-diphosphooligosaccharide-protein glycotransferase activity very long chain fatty acid biosynthesis II lignin biosynthetic process lignin catabolic process protein N-linked glycosylation via asparagine Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 oligosaccharyltransferase complex hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions | details |
| TreatCFM001198 | sulfate reduction II (assimilatory) sulfide oxidation, using siroheme sulfite reductase regulation of meristem structural organization DNA packaging sulfate reduction sulfite reductase activity sulfite reductase (ferredoxin) activity regulation of DNA replication carpel development Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) Sulfur metabolism NF-kappa B signaling pathway negative regulation of transcription, DNA-templated chloroplast nucleoid stromule Transcription_related, Transcription factor: HB | details |
| TreatCFM001296 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-linked glycosylation via asparagine post-translational protein modification protein phosphorylation base-excision repair vindoline and vinblastine biosynthesis N-Glycan biosynthesis nucleotide binding dolichyl-diphosphooligosaccharide-protein glycotransferase activity protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) oligosaccharyltransferase complex | details |
| TreatCFM001334 | mitochondrial respiratory chain complex IV assembly biotin biosynthetic process adenosylmethionine-8-amino-7-oxononanoate transaminase activity dethiobiotin synthase activity Biotin metabolism mitochondrion | details |
| TreatCFM001633 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC removal of superoxide radicals amino acid transmembrane transport cullin family protein binding N,N-dimethylaniline monooxygenase activity superoxide dismutase activity mitochondrial matrix oxidation-reduction process RNA transport amino acid transmembrane transporter activity NADP binding | details |
| TreatCFM001794 | proteolysis carboxypeptidase activity Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
| TreatCFM002024 | mitochondrial respiratory chain complex IV assembly protein maturation by iron-sulfur cluster transfer iron-sulfur cluster assembly ferrous iron binding structural molecule activity 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM002025 | DNA packaging microtubule severing sulfide oxidation, using siroheme sulfite reductase sulfate reduction Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) regulation of DNA replication sulfite reductase activity sulfite reductase (ferredoxin) activity guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway sulfate reduction II (assimilatory) adenosine nucleotides degradation I 5'-nucleotidase activity negative regulation of transcription, DNA-templated Sulfur metabolism NF-kappa B signaling pathway chloroplast nucleoid stromule microtubule-severing ATPase activity dephosphorylation Purine metabolism | details |
| TreatCFM002096 | ribosomal large subunit export from nucleus endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding Transcription_related, Transcription factor: Trihelix ribosomal large subunit biogenesis Aminoacyl-tRNA biosynthesis preribosome, large subunit precursor ligase activity nucleolus cytoplasmic part | details |
| TreatCFM002099 | DNA-7-methylguanine glycosylase activity DNA-3-methylguanine glycosylase activity DNA-7-methyladenine glycosylase activity DNA-3-methyladenine glycosylase activity U1 snRNA binding snRNA stem-loop binding U1 snRNP protein domain specific binding viral nucleocapsid base-excision repair Base excision repair MAPK signaling pathway - yeast mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |