TreatCFM002038's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein phosphatase type 1 complex | 0.000354636 | GO:0000164 |
| regulation of phosphoprotein phosphatase activity | 0.001950499 | GO:0043666 |
| Fanconi anemia pathway | 0.006903152 | KEGG pathway |
| Mismatch repair | 0.006903152 | KEGG pathway |
| DNA biosynthetic process | 0.012169917 | GO:0071897 |
| DNA repair | 0.021032279 | GO:0006281 |
| protein phosphatase inhibitor activity | 0.02225339 | GO:0004864 |
| nucleotidyltransferase activity | 0.034333208 | GO:0016779 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003018 | AT5G52200 (3.00E-22) | I-2|inhibitor-2 |
| CRO_T004182 | AT2G30480 (3.00E-13) | unknown protein |
| CRO_T004672 | AT3G50380 (0) | Protein of unknown function (DUF1162) |
| CRO_T010840 | AT5G44750 (0) | ATREV1|HOMOLOG OF REVERSIONLESS 1 |
| CRO_T029719 | AT4G02460 (0) | PMS1|POSTMEIOTIC SEGREGATION 1 |
| CRO_T030524 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
| TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
| TreatCFM002043 | adenosine ribonucleotides de novo biosynthesis mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism Mismatch repair SNARE interactions in vesicular transport | details |
Expression profiles
 Show details about module gene expression profiling |