TreatCFM001827's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Fanconi anemia pathway | 2.75E-05 | KEGG pathway |
| RNA lariat debranching enzyme activity | 0.007710803 | GO:0008419 |
| Endocytosis | 0.026405845 | KEGG pathway |
| DNA metabolic process | 0.032773545 | GO:0006259 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.032773545 | GO:0090502 |
| mRNA splicing, via spliceosome | 0.032773545 | GO:0000398 |
| DNA biosynthetic process | 0.032773545 | GO:0071897 |
| translational initiation | 0.032773545 | GO:0006413 |
| cellular response to DNA damage stimulus | 0.032773545 | GO:0006974 |
| positive regulation of GTPase activity | 0.032773545 | GO:0043547 |
| DNA repair | 0.036511149 | GO:0006281 |
| embryo development ending in seed dormancy | 0.041882191 | GO:0009793 |
| nucleotidyltransferase activity | 0.04359136 | GO:0016779 |
| GTPase activator activity | 0.04359136 | GO:0005096 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003375 | AT2G40780 (4.00E-36) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T010840 | AT5G44750 (0) | ATREV1|HOMOLOG OF REVERSIONLESS 1 |
| CRO_T014242 | AT5G44750 (8.00E-37) | ATREV1|HOMOLOG OF REVERSIONLESS 1 |
| CRO_T017750 | AT4G05330 (4.00E-20) | AGD13|ARF-GAP domain 13 |
| CRO_T025620 | AT4G31770 (5.00E-157) | ATDBR1|DEBRANCHING ENZYME 1 |
| CRO_T030524 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000032 | details | |
| TreatCFM000044 | details | |
| TreatCFM000050 | details | |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000270 | CMP-3-deoxy-D-manno-octulosonate biosynthesis 3-deoxy-8-phosphooctulonate synthase activity voltage-gated potassium channel activity Lipopolysaccharide biosynthesis clathrin adaptor complex GTPase activator activity cellular response to DNA damage stimulus potassium ion transport regulation of membrane potential Fanconi anemia pathway Lysosome protein transporter activity biosynthetic process ion transmembrane transport positive regulation of GTPase activity DNA metabolic process cytoplasm Plant-pathogen interaction Endocytosis vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000392 | translational initiation translation initiation factor activity viral replication complex formation and maintenance xyloglucan biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b formation of glycosidic bonds, GlycosylTransferases: GTnc Ribosome biogenesis in eukaryotes ribosome biogenesis plant-type vacuole membrane GTPase activity | details |
| TreatCFM000427 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity Cyanoamino acid metabolism nitrate transport response to nitrate electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity MAP kinase activity photosynthetic electron transport in photosystem II | details |
| TreatCFM000476 | aerobic respiration electron transport chain Oxidative phosphorylation translational initiation hydrogen ion transmembrane transport | details |
| TreatCFM000624 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc RISC complex integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis ribonuclease III activity translational initiation translation initiation factor activity transferase activity, transferring glycosyl groups | details |
| TreatCFM000702 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth MAPK cascade | details |
| TreatCFM000751 | RNA transport nuclear matrix nucleobase-containing compound transmembrane transporter activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Ubiquitin_Proteasome_system, DUB: USP tRNA re-export from nucleus meristem initiation tRNA binding thiol-dependent ubiquitin-specific protease activity nuclear pore Ran GTPase binding GTPase activator activity Endocytosis flower development protein deubiquitination | details |
| TreatCFM000753 | details | |
| TreatCFM000785 | mitotic spindle assembly checkpoint Oxidative phosphorylation | details |
| TreatCFM000833 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase RNA lariat debranching enzyme activity NF-kappa B signaling pathway | details |
| TreatCFM000906 | Transcription_related, Transcription factor: TCP electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity photosynthetic electron transport in photosystem II translational initiation translation initiation factor activity | details |
| TreatCFM001108 | translation initiation factor activity xyloglucan biosynthesis osmosensor activity histidine phosphotransfer kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Orphans stomatal complex patterning DNA-dependent ATPase activity phosphorelay sensor kinase activity damaged DNA binding eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex seed maturation response to osmotic stress regulation of translational initiation response to water deprivation phosphorelay signal transduction system signal transduction by protein phosphorylation formation of translation preinitiation complex translational initiation DNA repair helicase activity | details |
| TreatCFM001233 | translational initiation translation initiation factor activity | details |
| TreatCFM001255 | translational initiation translation initiation factor activity | details |
| TreatCFM001261 | translational initiation Transcription_related, Transcription factor: TCP Ubiquitin mediated proteolysis translation initiation factor activity | details |
| TreatCFM001466 | RNA lariat debranching enzyme activity zinc ion binding GTP cyclohydrolase I activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III tau-protein kinase activity tetrahydrofolate biosynthesis II tetrahydrofolate biosynthetic process tetrahydrobiopterin biosynthetic process 7,8-dihydroneopterin 3'-triphosphate biosynthetic process Folate biosynthesis RNA modification RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome RNA transport protein homodimerization activity embryo development ending in seed dormancy | details |
| TreatCFM001467 | GTP cyclohydrolase I activity RNA lariat debranching enzyme activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II tetrahydrobiopterin biosynthetic process tetrahydrofolate biosynthetic process 7,8-dihydroneopterin 3'-triphosphate biosynthetic process Folate biosynthesis RNA modification zinc ion binding RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome protein homodimerization activity RNA transport embryo development ending in seed dormancy | details |
| TreatCFM001573 | phosphate-containing compound metabolic process cellular protein modification process translational initiation | details |
| TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
| TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
| TreatCFM001710 | Endocytosis positive regulation of GTPase activity GTP:GDP antiporter activity regulation of vesicle targeting, to, from or within Golgi endosome transport via multivesicular body sorting pathway root hair cell differentiation cell adhesion longitudinal axis specification establishment of planar polarity basipetal auxin transport regulation of ARF protein signal transduction cellular response to DNA damage stimulus ARF guanyl-nucleotide exchange factor activity Fanconi anemia pathway Lysosome endosome membrane lateral root formation cytokinesis by cell plate formation clathrin adaptor complex phloem or xylem histogenesis unidimensional cell growth GTPase activator activity DNA metabolic process protein transporter activity protein homodimerization activity protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM002038 | protein phosphatase type 1 complex regulation of phosphoprotein phosphatase activity Fanconi anemia pathway Mismatch repair DNA biosynthetic process DNA repair protein phosphatase inhibitor activity nucleotidyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |