TreatCFM002058's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tripeptidyl-peptidase activity | 0.01038718 | GO:0008240 |
| tRNA wobble uridine modification | 0.011259969 | GO:0002098 |
| protein import into chloroplast stroma | 0.011259969 | GO:0045037 |
| mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 0.012871389 | GO:0000276 |
| cytosolic ribosome | 0.019295674 | GO:0022626 |
| chloroplast organization | 0.035263197 | GO:0009658 |
| RNA processing | 0.035263197 | GO:0006396 |
| ATP synthesis coupled proton transport | 0.035263197 | GO:0015986 |
| RNA degradation | 0.039155773 | KEGG pathway |
| poly(A) RNA binding | 0.041481233 | GO:0044822 |
| hydrogen ion transmembrane transporter activity | 0.041481233 | GO:0015078 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001428 | AT1G12440 (5.00E-46) | A20/AN1-like zinc finger family protein |
| CRO_T002345 | AT2G13440 (0) | glucose-inhibited division family A protein |
| CRO_T003161 | AT4G20850 (2.00E-145) | TPP2|tripeptidyl peptidase ii |
| CRO_T006212 | AT3G52300 (8.00E-43) | ATPQ|ATP synthase D chain, mitochondrial |
| CRO_T022628 | AT1G48650 (0) | DEA(D/H)-box RNA helicase family protein |
| CRO_T027227 | AT1G06950 (0) | ATTIC110|TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000206 | vacuolar membrane Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase tripeptidyl-peptidase activity cytosolic ribosome hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity Oxidative phosphorylation | details |
| TreatCFM001210 | protein import into chloroplast stroma protein refolding RNA secondary structure unwinding chloroplast organization | details |
| TreatCFM001992 | respiratory chain complex II nucleotide-excision repair factor 1 complex embryo development ending in seed dormancy nucleotide-excision repair, DNA incision, 5'-to lesion nucleotide-excision repair involved in interstrand cross-link repair Nucleotide excision repair tRNA wobble uridine modification resolution of meiotic recombination intermediates fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate double-strand break repair via homologous recombination single-stranded DNA endodeoxyribonuclease activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) 6-phosphofructokinase activity oxidoreductase activity Glycolysis / Gluconeogenesis carbohydrate phosphorylation single-stranded DNA binding damaged DNA binding response to cytokinin isomerase activity FMN binding formation of glycosidic bonds, GlycosylTransferases: GTnc Photosynthesis | details |
| TreatCFM002172 | negative gravitropism late endosome to vacuole transport phototropism embryonic axis specification amyloplast organization endosome organization Regulation of actin cytoskeleton response to starvation multidimensional cell growth protein targeting to vacuole trichome morphogenesis actin filament organization RNA degradation cell division positive regulation of transcription, DNA-templated RNA processing poly(A) RNA binding late endosome membrane ATP-dependent RNA helicase activity embryo development ending in seed dormancy mediator complex Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |