TreatCFM002172's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative gravitropism | 0.007353361 | GO:0009959 |
| late endosome to vacuole transport | 0.007353361 | GO:0045324 |
| phototropism | 0.007353361 | GO:0009638 |
| embryonic axis specification | 0.007353361 | GO:0000578 |
| amyloplast organization | 0.007353361 | GO:0009660 |
| endosome organization | 0.007353361 | GO:0007032 |
| Regulation of actin cytoskeleton | 0.010625727 | KEGG pathway |
| response to starvation | 0.013358687 | GO:0042594 |
| multidimensional cell growth | 0.013358687 | GO:0009825 |
| protein targeting to vacuole | 0.013358687 | GO:0006623 |
| trichome morphogenesis | 0.013358687 | GO:0010090 |
| actin filament organization | 0.013358687 | GO:0007015 |
| RNA degradation | 0.016332981 | KEGG pathway |
| cell division | 0.024269514 | GO:0051301 |
| positive regulation of transcription, DNA-templated | 0.024269514 | GO:0045893 |
| RNA processing | 0.028804647 | GO:0006396 |
| poly(A) RNA binding | 0.029515909 | GO:0044822 |
| late endosome membrane | 0.032114577 | GO:0031902 |
| ATP-dependent RNA helicase activity | 0.038650419 | GO:0004004 |
| embryo development ending in seed dormancy | 0.040989384 | GO:0009793 |
| mediator complex | 0.044912592 | GO:0016592 |
| Ubiquitin_Proteasome_system, E3: RING | 0.046833047 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002764 | AT1G23230 (0) | |
| CRO_T006731 | - | - |
| CRO_T008090 | - | - |
| CRO_T019812 | AT2G35110 (2.00E-26) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
| CRO_T020984 | AT3G03550 (4.00E-20) | RING/U-box superfamily protein |
| CRO_T022628 | AT1G48650 (0) | DEA(D/H)-box RNA helicase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM002058 | tripeptidyl-peptidase activity tRNA wobble uridine modification protein import into chloroplast stroma mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cytosolic ribosome chloroplast organization RNA processing ATP synthesis coupled proton transport RNA degradation poly(A) RNA binding hydrogen ion transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |