TreatCFM002078's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Glycolysis / Gluconeogenesis | 0.00730655 | KEGG pathway |
| mitochondrial inner membrane peptidase complex | 0.009847074 | GO:0042720 |
| glycolysis IV (plant cytosol) | 0.010356657 | plantCyc |
| diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 0.010793509 | GO:0047334 |
| mitochondrial respiratory chain complex assembly | 0.012866825 | GO:0033108 |
| protein processing involved in protein targeting to mitochondrion | 0.012866825 | GO:0006627 |
| 6-phosphofructokinase activity | 0.013483516 | GO:0003872 |
| signal peptide processing | 0.013928972 | GO:0006465 |
| glycolytic process through fructose-6-phosphate | 0.013928972 | GO:0061615 |
| carbohydrate phosphorylation | 0.01798563 | GO:0046835 |
| DNA metabolic process | 0.023523404 | GO:0006259 |
| ubiquitin-dependent protein catabolic process | 0.039583681 | GO:0006511 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005543 | AT3G49740 (6.00E-168) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T015173 | AT4G33990 (3.00E-63) | EMB2758|embryo defective 2758 |
| CRO_T017380 | AT5G61460 (9.00E-40) | MIM|hypersensitive to MMS, irradiation and MMC; SMC6B|STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B |
| CRO_T020108 | AT3G21850 (4.00E-17) | ASK9|SKP1-like 9 |
| CRO_T023531 | AT5G24710 (0) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T023844 | AT2G31140 (1.00E-41) | Peptidase S24/S26A/S26B/S26C family protein |
| CRO_T026762 | AT1G20950 (0) | Phosphofructokinase family protein |
| CRO_T030233 | AT3G45750 (4.00E-21) | Nucleotidyltransferase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001134 | RNA catabolic process specification of floral organ identity sodium ion transport RNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: SKP1 Plant-pathogen interaction RNA degradation nucleoplasm ubiquitin-dependent protein catabolic process | details |
| TreatCFM001551 | cytosol regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion sucrose biosynthetic process modulation by symbiont of host calcium or calmodulin-mediated signal transduction nectar secretion mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion regulation of photomorphogenesis calcium-mediated signaling sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II mitochondrial inner membrane peptidase complex signal peptide processing Ras signaling pathway formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex sucrose-phosphate synthase activity sucrose synthase activity ribosome binding Starch and sucrose metabolism translation initiation factor activity protein binding 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM002118 | organic acid transmembrane transporter activity molybdate ion transmembrane transporter activity molybdate ion transport organic acid transmembrane transport transcription coactivator activity transcription from RNA polymerase II promoter positive regulation of transcription, DNA-templated | details |
| TreatCFM002163 | Estrogen signaling pathway L-tryptophan biosynthesis sphingolipid biosynthesis (plants) Sphingolipid metabolism phosphoribosylanthranilate isomerase activity regulation of programmed cell death chaperone-mediated protein folding tryptophan biosynthetic process cell growth protein peptidyl-prolyl isomerization biosynthetic process FK506 binding metalloendopeptidase activity peptidyl-prolyl cis-trans isomerase activity Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |