TreatCFM002089's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| AMPK signaling pathway | 0.004071992 | KEGG pathway |
| small ribosomal subunit rRNA binding | 0.012142698 | GO:0070181 |
| translational elongation | 0.016984843 | GO:0006414 |
| translation elongation factor activity | 0.035340397 | GO:0003746 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006411 | - | - |
| CRO_T007552 | AT3G17170 (2.00E-50) | RFC3|REGULATOR OF FATTY-ACID COMPOSITION 3 |
| CRO_T009798 | - | - |
| CRO_T011107 | AT1G73885 (8.00E-34) | unknown protein |
| CRO_T014411 | AT3G46730 (6.00E-52) | NB-ARC domain-containing disease resistance protein |
| CRO_T026777 | AT2G41950 (2.00E-64) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001008 | Cytochrome_P450, Cytochrome P450: CYP97A lutein biosynthesis xanthophyll biosynthetic process Carotenoid biosynthesis carotene beta-ring hydroxylase activity aromatase activity calcium-dependent phospholipid binding chloroplast envelope | details |
| TreatCFM001828 | ascorbate glutathione cycle benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I sucrose degradation III (sucrose invertase) Transcription_related, Transcription factor: Orphans AMPK signaling pathway Glycolysis / Gluconeogenesis barrier septum assembly cellular aldehyde metabolic process cellular response to nitric oxide ubiquinone-6 biosynthetic process cellular response to hydrogen peroxide cellular response to molecule of bacterial origin regulation of stomatal closure GTP binding aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity negative regulation of ethylene-activated signaling pathway transcription from plastid promoter NADH dehydrogenase activity phosphotransferase activity, alcohol group as acceptor negative regulation of abscisic acid-activated signaling pathway peptidyl-histidine phosphorylation oxidation-reduction process aldehyde dehydrogenase (NAD) activity phosphorelay sensor kinase activity signal transduction by protein phosphorylation root development chloroplast organization translational elongation phosphorelay signal transduction system | details |
| TreatCFM001966 | transcription from plastid promoter plastid organization barrier septum assembly Glycerolipid metabolism chloroplast nucleoid CDP-diacylglycerol biosynthesis I sucrose degradation III (sucrose invertase) chloroplast part diacylglycerol and triacylglycerol biosynthesis chloroplast organization phosphotransferase activity, alcohol group as acceptor | details |
| TreatCFM002174 | acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis DNA replication response to stress Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |