TreatCFM001966's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription from plastid promoter | 0.006070003 | GO:0042793 |
| plastid organization | 0.006070003 | GO:0009657 |
| barrier septum assembly | 0.006070003 | GO:0000917 |
| Glycerolipid metabolism | 0.009362512 | KEGG pathway |
| chloroplast nucleoid | 0.010339733 | GO:0042644 |
| CDP-diacylglycerol biosynthesis I | 0.011683984 | plantCyc |
| sucrose degradation III (sucrose invertase) | 0.011683984 | plantCyc |
| chloroplast part | 0.014020058 | GO:0044434 |
| diacylglycerol and triacylglycerol biosynthesis | 0.015551047 | plantCyc |
| chloroplast organization | 0.017670199 | GO:0009658 |
| phosphotransferase activity, alcohol group as acceptor | 0.02225339 | GO:0016773 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003021 | AT1G28530 (2.00E-84) | unknown protein |
| CRO_T004413 | AT2G22870 (2.00E-112) | EMB2001|embryo defective 2001 |
| CRO_T014411 | AT3G46730 (6.00E-52) | NB-ARC domain-containing disease resistance protein |
| CRO_T021416 | AT3G18850 (7.00E-25) | LPAT5|lysophosphatidyl acyltransferase 5 |
| CRO_T031616 | AT3G54090 (3.00E-168) | FLN1|fructokinase-like 1 |
| CRO_T031794 | AT1G11430 (3.00E-79) | MORF9|multiple organellar RNA editing factor 9 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000156 | plastid organization redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) | details |
| TreatCFM000776 | plastid organization seed maturation response to cold response to salt stress response to water deprivation response to abscisic acid | details |
| TreatCFM001008 | Cytochrome_P450, Cytochrome P450: CYP97A lutein biosynthesis xanthophyll biosynthetic process Carotenoid biosynthesis carotene beta-ring hydroxylase activity aromatase activity calcium-dependent phospholipid binding chloroplast envelope | details |
| TreatCFM001422 | Transcription_related, Transcription factor: WRKY plastid organization Glutathione metabolism Plant-pathogen interaction cellular metabolic process multicellular organism development | details |
| TreatCFM001437 | RNA splicing pelargonidin conjugates biosynthesis salvianin biosynthesis shisonin biosynthesis Glycerolipid metabolism CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis chloroplast envelope chloroplast thylakoid membrane | details |
| TreatCFM001828 | ascorbate glutathione cycle benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I sucrose degradation III (sucrose invertase) Transcription_related, Transcription factor: Orphans AMPK signaling pathway Glycolysis / Gluconeogenesis barrier septum assembly cellular aldehyde metabolic process cellular response to nitric oxide ubiquinone-6 biosynthetic process cellular response to hydrogen peroxide cellular response to molecule of bacterial origin regulation of stomatal closure GTP binding aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity negative regulation of ethylene-activated signaling pathway transcription from plastid promoter NADH dehydrogenase activity phosphotransferase activity, alcohol group as acceptor negative regulation of abscisic acid-activated signaling pathway peptidyl-histidine phosphorylation oxidation-reduction process aldehyde dehydrogenase (NAD) activity phosphorelay sensor kinase activity signal transduction by protein phosphorylation root development chloroplast organization translational elongation phosphorelay signal transduction system | details |
| TreatCFM002089 | AMPK signaling pathway small ribosomal subunit rRNA binding translational elongation translation elongation factor activity | details |
| TreatCFM002124 | retinal dehydrogenase activity coniferyl-aldehyde dehydrogenase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I ferulate and sinapate biosynthesis sucrose degradation III (sucrose invertase) chloroplast nucleoid phosphotransferase activity, alcohol group as acceptor MAPK signaling pathway plastid organization transcription from plastid promoter phenylpropanoid biosynthetic process chloroplast organization Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |