TreatCFM002095's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Alfin-like | 0.007386615 | TF family |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.008096328 | GO:0000179 |
| pentose phosphate pathway (non-oxidative branch) | 0.010720611 | plantCyc |
| rRNA methylation | 0.011259969 | GO:0031167 |
| cell fate specification | 0.011259969 | GO:0001708 |
| Calvin-Benson-Bassham cycle | 0.011350201 | plantCyc |
| Rubisco shunt | 0.011350201 | plantCyc |
| isomerase activity | 0.018173719 | GO:0016853 |
| zinc ion binding | 0.018173719 | GO:0008270 |
| histone binding | 0.018173719 | GO:0042393 |
| formation of translation preinitiation complex | 0.024087536 | GO:0001731 |
| regulation of translational initiation | 0.024087536 | GO:0006446 |
| RNA transport | 0.026828752 | KEGG pathway |
| cell division | 0.02759386 | GO:0051301 |
| translation initiation factor activity | 0.031403527 | GO:0003743 |
| eukaryotic 48S preinitiation complex | 0.03318482 | GO:0033290 |
| eukaryotic translation initiation factor 3 complex | 0.03318482 | GO:0005852 |
| eukaryotic 43S preinitiation complex | 0.03318482 | GO:0016282 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001567 | AT2G46280 (2.00E-23) | TRIP-1|TGF-beta receptor interacting protein 1 |
| CRO_T021384 | AT3G07200 (6.00E-15) | RING/U-box superfamily protein |
| CRO_T024477 | - | - |
| CRO_T026456 | AT3G04880 (4.00E-116) | DRT102|DNA-DAMAGE-REPAIR/TOLERATION 2 |
| CRO_T027919 | AT2G47420 (3.00E-139) | DIM1A|adenosine dimethyl transferase 1A |
| CRO_T030946 | AT3G11200 (5.00E-21) | AL2|alfin-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000246 | Legionellosis rRNA (adenine-N6,N6-)-dimethyltransferase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: MYB-related rRNA methylation cell fate specification substrate-specific transmembrane transporter activity carbohydrate transport ER to Golgi vesicle-mediated transport cell division small GTPase mediated signal transduction | details |
| TreatCFM001048 | Ubiquitin_Proteasome_system, E3: RING transcriptional repressor complex vegetative phase change developmental process involved in reproduction organ senescence detection of nutrient Apelin signaling pathway retromer complex sugar mediated signaling pathway Cell cycle primary root development retrograde transport, endosome to Golgi Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Endocytosis | details |
| TreatCFM001151 | positive regulation of GTPase activity chromosome organization tubulin complex assembly post-chaperonin tubulin folding pathway regulation of ARF protein signal transduction Cell cycle microtubule cytoskeleton organization ARF guanyl-nucleotide exchange factor activity beta-tubulin binding GTPase activator activity embryo development ending in seed dormancy chromosome microtubule | details |
| TreatCFM001160 | L-asparagine degradation I pentose phosphate pathway (non-oxidative branch) superpathway of aspartate and asparagine biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Calvin-Benson-Bassham cycle Rubisco shunt | details |
| TreatCFM001533 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process Transcription_related, Transcription factor: CAMTA sphingolipid biosynthesis (plants) | details |
| TreatCFM001697 | ceramide degradation Thyroid hormone signaling pathway sphingolipid biosynthesis (plants) D-erythro-sphingosine kinase activity sphingolipid biosynthetic process positive regulation of cell proliferation cold acclimation core mediator complex COPII vesicle coat plasma membrane mediator complex RNA polymerase II transcription cofactor activity zinc ion binding regulation of transcription from RNA polymerase II promoter ER to Golgi vesicle-mediated transport methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |