TreatCFM002126's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosolic large ribosomal subunit | 0.001086304 | GO:0022625 |
| phosphate acquisition | 0.005131975 | plantCyc |
| Ribosome | 0.005863851 | KEGG pathway |
| protein kinase activator activity | 0.006072695 | GO:0030295 |
| structural constituent of ribosome | 0.007417797 | GO:0003735 |
| large ribosomal subunit rRNA binding | 0.007417797 | GO:0070180 |
| Regulation of actin cytoskeleton | 0.007789323 | KEGG pathway |
| Riboflavin metabolism | 0.007789323 | KEGG pathway |
| positive regulation of protein kinase activity | 0.009029289 | GO:0045860 |
| acid phosphatase activity | 0.015151481 | GO:0003993 |
| actin filament organization | 0.02254322 | GO:0007015 |
| multidimensional cell growth | 0.02254322 | GO:0009825 |
| trichome morphogenesis | 0.02254322 | GO:0010090 |
| translational elongation | 0.024024791 | GO:0006414 |
| cytoplasmic translation | 0.024024791 | GO:0002181 |
| preribosome, large subunit precursor | 0.025261798 | GO:0030687 |
| positive regulation of transcription, DNA-templated | 0.027007929 | GO:0045893 |
| dephosphorylation | 0.046559982 | GO:0016311 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005540 | AT2G01880 (2.00E-112) | ATPAP7|PURPLE ACID PHOSPHATASE 7 |
| CRO_T015048 | AT3G05590 (9.00E-93) | RPL18|ribosomal protein L18 |
| CRO_T015219 | AT4G32160 (4.00E-54) | Phox (PX) domain-containing protein |
| CRO_T021921 | AT1G64583 (1.00E-35) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T030453 | AT2G35110 (3.00E-35) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
| CRO_T031223 | AT1G01100 (3.00E-18) | 60S acidic ribosomal protein family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000103 | trans-lycopene biosynthesis II (plants) carotenoid isomerase activity | details |
| TreatCFM000628 | transcription elongation from RNA polymerase II promoter Transcription_related, Transcription regulator: IWS1 elongin complex fatty acid elongation -- saturated nucleosome stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) Fatty acid metabolism mRNA surveillance pathway Necroptosis | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM001313 | translation release factor activity, codon specific mRNA surveillance pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination cytoplasm single-organism process | details |
| TreatCFM002072 | Measles peptidase activity proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |