TreatCFM002158's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 0.000101394 | KEGG pathway |
| structural constituent of ribosome | 0.000161324 | GO:0003735 |
| RNA degradation | 0.000201847 | KEGG pathway |
| translation | 0.000479684 | GO:0006412 |
| cytosolic large ribosomal subunit | 0.001475057 | GO:0022625 |
| assembly of large subunit precursor of preribosome | 0.004047985 | GO:1902626 |
| positive regulation of translational fidelity | 0.00449683 | GO:0045903 |
| nucleosome assembly | 0.014141594 | GO:0006334 |
| ribosomal large subunit assembly | 0.014536617 | GO:0000027 |
| rRNA binding | 0.027791646 | GO:0019843 |
| cytosolic small ribosomal subunit | 0.047056253 | GO:0022627 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002316 | AT1G76630 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T003834 | AT5G39850 (2.00E-93) | Ribosomal protein S4 |
| CRO_T004554 | AT3G16780 (2.00E-69) | Ribosomal protein L19e family protein |
| CRO_T010105 | AT3G49660 (3.00E-21) | WDR5a|human WDR5 (WD40 repeat) homolog a |
| CRO_T012407 | AT2G44860 (3.00E-60) | Ribosomal protein L24e family protein |
| CRO_T012445 | AT4G05460 (3.00E-30) | RNI-like superfamily protein |
| CRO_T017274 | AT3G13290 (0) | VCR|varicose-related |
| CRO_T024876 | AT2G19480 (1.00E-100) | NAP1; 2|nucleosome assembly protein 1; 2; NFA02|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02; NFA2|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001502 | Ribosome translation positive regulation of translational fidelity nucleosome assembly structural constituent of ribosome Transcription_related, Transcription factor: Orphans | details |
| TreatCFM001586 | positive regulation of translational fidelity oligopeptide transport cytosolic small ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001655 | Cytochrome_P450, Cytochrome P450: CYP89A Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase vernolate biosynthesis I glycolipid translocation poly-hydroxy fatty acids biosynthesis lipid transporter activity RNA metabolic process endoplasmic reticulum membrane membrane Protein processing in endoplasmic reticulum secondary metabolite biosynthetic process | details |
| TreatCFM002082 | myosin complex motor activity actin binding ATP binding hydrogen-exporting ATPase activity, phosphorylative mechanism transport of virus in host, cell to cell ATP biosynthetic process regulation of intracellular pH Transcription_related, Transcription factor: C2C2-Dof hydrogen ion transmembrane transport Oxidative phosphorylation | details |
| TreatCFM002169 | carbohydrate kinase activity UDP-D-galactose biosynthesis D-galactose degradation III stachyose degradation UDP-sugars interconversion assembly of large subunit precursor of preribosome Golgi vesicle prefusion complex stabilization phosphotransferase activity, alcohol group as acceptor nucleotide binding retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization ribosomal large subunit assembly Golgi transport complex peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |