TreatCFM001502's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 0.001967551 | KEGG pathway |
| translation | 0.006251127 | GO:0006412 |
| positive regulation of translational fidelity | 0.006251127 | GO:0045903 |
| nucleosome assembly | 0.009083652 | GO:0006334 |
| structural constituent of ribosome | 0.014723913 | GO:0003735 |
| Transcription_related, Transcription factor: Orphans | 0.031772823 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000786 | AT1G01695 (1.00E-06) | TRM33|TON1 Recruiting Motif 33 |
| CRO_T003834 | AT5G39850 (2.00E-93) | Ribosomal protein S4 |
| CRO_T004554 | AT3G16780 (2.00E-69) | Ribosomal protein L19e family protein |
| CRO_T008445 | AT1G24095 (7.00E-62) | Putative thiol-disulphide oxidoreductase DCC |
| CRO_T012445 | AT4G05460 (3.00E-30) | RNI-like superfamily protein |
| CRO_T023622 | AT1G21740 (2.00E-23) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T023779 | AT5G48250 (1.00E-97) | BBX8|B-box domain protein 8 |
| CRO_T024876 | AT2G19480 (1.00E-100) | NAP1; 2|nucleosome assembly protein 1; 2; NFA02|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02; NFA2|NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM000861 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination abscisic acid biosynthesis cellulose biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Purine metabolism microtubule-based movement cellulose biosynthetic process translational initiation | details |
| TreatCFM000866 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity suberin biosynthetic process macromolecule depalmitoylation biological regulation | details |
| TreatCFM001300 | glycolipid translocation Hippo signaling pathway -fly thiol-dependent ubiquitinyl hydrolase activity protein-cysteine S-palmitoyltransferase activity lipid transporter activity protein deubiquitination Ribosome biogenesis in eukaryotes ubiquitin-dependent protein catabolic process | details |
| TreatCFM001586 | positive regulation of translational fidelity oligopeptide transport cytosolic small ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001655 | Cytochrome_P450, Cytochrome P450: CYP89A Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase vernolate biosynthesis I glycolipid translocation poly-hydroxy fatty acids biosynthesis lipid transporter activity RNA metabolic process endoplasmic reticulum membrane membrane Protein processing in endoplasmic reticulum secondary metabolite biosynthetic process | details |
| TreatCFM002082 | myosin complex motor activity actin binding ATP binding hydrogen-exporting ATPase activity, phosphorylative mechanism transport of virus in host, cell to cell ATP biosynthetic process regulation of intracellular pH Transcription_related, Transcription factor: C2C2-Dof hydrogen ion transmembrane transport Oxidative phosphorylation | details |
| TreatCFM002158 | Ribosome structural constituent of ribosome RNA degradation translation cytosolic large ribosomal subunit assembly of large subunit precursor of preribosome positive regulation of translational fidelity nucleosome assembly ribosomal large subunit assembly rRNA binding cytosolic small ribosomal subunit | details |
Expression profiles
 Show details about module gene expression profiling |