PH01000017G0420's details annotation
1.Annotation
ICBR annotation: tobamovirus multiplication protein, putative, expressed
Blast result AT2G02180 : 6.00E-100
Blast annotation: tobamovirus multiplication protein 3
2.Location
Scaffold: PH01000017
Strand: +
| Region | Start | End |
| gene | 298647 | 303110 |
| mRNA | 298647 | 303110 |
| exon | 298647 | 299161 |
| exon | 299401 | 299491 |
| exon | 299586 | 299638 |
| exon | 299738 | 299830 |
| exon | 299910 | 299981 |
| exon | 300147 | 300234 |
| exon | 300521 | 300593 |
| exon | 301317 | 301380 |
| exon | 301463 | 301516 |
| exon | 301600 | 301677 |
| exon | 302384 | 303110 |
| CDS | 299042 | 299161 |
| CDS | 299401 | 299491 |
| CDS | 299586 | 299638 |
| CDS | 299738 | 299830 |
| CDS | 299910 | 299981 |
| CDS | 300147 | 300234 |
| CDS | 300521 | 300593 |
| CDS | 301317 | 301380 |
| CDS | 301463 | 301516 |
| CDS | 301600 | 301677 |
| CDS | 302384 | 302476 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation |
| coexpression network | CFinderM001299 | SNARE_interactions_in_vesicular_transport Golgi vesicle transport, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001556 | RNA_transport bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06454.10 | DUF1084 | 7 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.