|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.002750129 | KEGG | | 3-dehydroquinate synthase activity, | 0.01814688 | GO:0003856 | | SNARE_interactions_in_vesicular_transport | 0.020562895 | KEGG | | Golgi vesicle transport, | 0.021376832 | GO:0048193 | | aromatic amino acid family biosynthetic process, | 0.021376832 | GO:0009073 | | phosphatidylinositol metabolic process, | 0.027510208 | GO:0046488 | | RNA_degradation | 0.049379737 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000017G0420 | tobamovirus multiplication protein 3 | AT2G02180 (6.00E-100) | | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | | PH01001022G0480 | mechanosensitive channel of small conductance-like 10 | AT5G12080 (1.00E-115) | | PH01001621G0320 | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | AT3G61140 (8.40E-88) | | PH01001811G0140 | phosphatidylinositol-4-phosphate 5-kinase 2 | AT1G77740 (4.00E-102) | | PH01003872G0040 | non-intrinsic ABC protein 9 | AT5G02270 (2.00E-117) | | PH01006031G0060 | 3-dehydroquinate synthase, putative | AT5G66120 (1.00E-170) | | PH01006766G0010 | syntaxin of plants 61 | AT1G28490 (9.10E-61) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
| details | | CFinderM000939 | microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001003 | Endocytosis
STE_STE11 (from iTAK)
| details | | CFinderM001060 | response to hormone stimulus,
RLK-Pelle_URK-1 (from iTAK)
galactose metabolic process,
nucleus,
UDP-glucose 4-epimerase activity,
protein dimerization activity,
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001299 | SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001383 | Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein transport,
small GTPase mediated signal transduction,
| details | | CFinderM001384 | protein transport,
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001556 | RNA_transport
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details |
4.Expression profilings |
