PH01000025G0100's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT4G37630 : 5.30E-30
Blast annotation: cyclin d5;1
2.Location
Scaffold: PH01000025
Strand: -
| Region | Start | End |
| gene | 88700 | 90711 |
| mRNA | 88700 | 90711 |
| exon | 88700 | 89030 |
| exon | 89162 | 89298 |
| exon | 89417 | 89732 |
| exon | 89831 | 89917 |
| exon | 90035 | 90711 |
| CDS | 88821 | 89030 |
| CDS | 89162 | 89298 |
| CDS | 89417 | 89732 |
| CDS | 89831 | 89917 |
| CDS | 90035 | 90328 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 86 | 188 |
| PF02984.18 | Cyclin_C | 192 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.