PH01000026G1530's details annotation
1.Annotation
ICBR annotation: ATMAK10, putative, expressed
Blast result AT2G11000 : 1.00E-115
Blast annotation: MAK10 homologue
2.Location
Scaffold: PH01000026
Strand: +
| Region | Start | End |
| gene | 1104430 | 1112582 |
| mRNA | 1104430 | 1112582 |
| exon | 1104430 | 1105169 |
| exon | 1105253 | 1105420 |
| exon | 1106241 | 1106394 |
| exon | 1106932 | 1107011 |
| exon | 1107553 | 1107825 |
| exon | 1107939 | 1108082 |
| exon | 1108734 | 1108856 |
| exon | 1109710 | 1109844 |
| exon | 1110237 | 1110293 |
| exon | 1111473 | 1111541 |
| exon | 1111815 | 1112582 |
| CDS | 1105026 | 1105169 |
| CDS | 1105253 | 1105420 |
| CDS | 1106241 | 1106394 |
| CDS | 1106932 | 1107011 |
| CDS | 1107553 | 1107825 |
| CDS | 1107939 | 1108082 |
| CDS | 1108734 | 1108856 |
| CDS | 1109710 | 1109844 |
| CDS | 1110237 | 1110293 |
| CDS | 1111473 | 1111541 |
| CDS | 1111815 | 1112054 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001553 | seryl-tRNA aminoacylation, serine-tRNA ligase activity, Regulation_of_autophagy tRNA aminoacylation for protein translation, ribonuclease activity, Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001896 | seryl-tRNA aminoacylation, serine-tRNA ligase activity, 5S rRNA binding, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04112.12 | Mak10 | 1 | 75 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.