PH01000038G1400's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G34310 : 0.00E+00
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 986393 | 993678 |
| mRNA | 986393 | 993678 |
| exon | 986393 | 988218 |
| exon | 989077 | 989306 |
| exon | 989477 | 990187 |
| exon | 990915 | 991991 |
| exon | 992156 | 992197 |
| exon | 992628 | 992704 |
| exon | 992803 | 992887 |
| exon | 992950 | 993033 |
| exon | 993111 | 993212 |
| exon | 993299 | 993397 |
| exon | 993447 | 993678 |
| CDS | 987537 | 988218 |
| CDS | 989077 | 989306 |
| CDS | 989477 | 990187 |
| CDS | 990915 | 991991 |
| CDS | 992156 | 992197 |
| CDS | 992628 | 992704 |
| CDS | 992803 | 992887 |
| CDS | 992950 | 993033 |
| CDS | 993111 | 993212 |
| CDS | 993299 | 993397 |
| CDS | 993447 | 993473 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000781 | spliceosomal complex, GPI anchor metabolic process, mitosis, Spliceosome |
| coexpression network | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis GPI anchor metabolic process, |
| coexpression network | CFinderM001473 | GPI anchor metabolic process, DNA recombination, RNA_degradation |
| coexpression network | CFinderM001559 | GT22 GlycosylTransferases intrinsic to endoplasmic reticulum membrane, GPI anchor metabolic process, GPI anchor biosynthetic process, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001636 | GPI anchor metabolic process, double-strand break repair, protein folding, nucleus, DNA metabolic process, exonuclease activity, endonuclease activity, phosphoprotein phosphatase activity, manganese ion binding, peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM001839 | GPI anchor metabolic process, DNA methylation, DNA recombination, Base_excision_repair Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001855 | Base_excision_repair GPI anchor metabolic process, DNA recombination, |
| coexpression network | CFinderM001856 | GPI anchor metabolic process, Base_excision_repair nuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0006505 | GPI anchor metabolic process |
| GO:0006886 | intracellular protein transport |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.