Annotation of co-expression genes

PH01000114G1190's details annotation

1.Annotation

ICBR annotation: protein kinase domain containing protein, expressed

Blast result AT4G29990 : 1.00E-141
Blast annotation: Leucine-rich repeat transmembrane protein kinase protein

2.Location

Scaffold: PH01000114
Strand: -

RegionStartEnd
gene801681810344
mRNA801681810344
exon801681802398
exon802545802731
exon802823802888
exon803291803417
exon806324806544
exon806662806825
exon807663807743
exon807824807895
exon808525808596
exon808729808867
exon809089809608
exon810054810344
CDS801972802398
CDS802545802731
CDS802823802888
CDS803291803417
CDS806324806544
CDS806662806825
CDS807663807743
CDS807824807895
CDS808525808596
CDS808729808867
CDS809089809608
CDS810054810134

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12819.6Malectin_like37187
PF13855.5LRR_8243302
PF07714.16Pkinase_Tyr408676

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.